myRT

myRT report for GCA_002516715.1_ASM251671v1

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Seq: NOGM01000124.1 Escherichia coli strain MOD1-EC5142 MOD1-EC5142_124_length_1160_cov_23.2853, whole genome shotgun sequence (1160 bp)
Overview 1 RT 1: 205-898 bp Neighborhood of RT #1 [205, 993] RVT-GII GIIM Feature: gene Location: 205-993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211-604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 -604 bp Feature: domain Description: GIIM Note: maturase Location: 688-898 bp Feature: domain Description: GIIM Note: maturase Location: 688-898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOGM01000074.1 Escherichia coli strain MOD1-EC5142 MOD1-EC5142_74_length_7896_cov_30.58, whole genome shotgun sequence (7896 bp)
Overview 1 RT 1: 1-7827 bp Neighborhood of RT #1 [1, 7841] YhhI VgrG RhsA RHS_repeat RhsA RhsA RVT-GII Feature: gene Location: 1-231 bp Feature: domain Description: YhhI Location: 4-133 bp Feature: domain Description: YhhI Location: 4-133 bp Feature: gene Location: 265-5454 bp Feature: domain Description: VgrG Location: 292-1729 bp Feature: domain Description: VgrG Location: 2 92 -172 9 bp Feature: domain Description: RhsA Location: 1819-2266 bp Feature: domain Description: RhsA Location: 1819-2 2 66 bp Feature: domain Description: RHS_repeat Location: 2329-2419 bp Feature: domain Description: RHS_repeat Location: 2 32 9-2 419 bp Feature: domain Description: RhsA Location: 2488-2824 bp Feature: domain Description: RhsA Location: 2 488-2 82 4 bp Feature: domain Description: RhsA Location: 2851-5020 bp Feature: domain Description: RhsA Location: 2 851-502 0 bp Feature: gene Location: 7173-7841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7644-7827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7644-782 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), VgrG (COG3501), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII

Seq: NOGM01000007.1 Escherichia coli strain MOD1-EC5142 MOD1-EC5142_7_length_167423_cov_24.7817, whole genome shotgun sequence (167423 bp)
Overview 1 RT 1: 95221-99258 bp Neighborhood of RT #1 [95221, 99260] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 95221-95355 bp Feature: gene Location: 95367-96317 bp Feature: gene Location: 96304-97254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96403-96994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96403 -96994 bp Feature: gene Location: 97548-97694 bp Feature: domain Description: COG3943 Location: 97551-97650 bp Feature: domain Description: COG3 943 Location: 97551-97650 bp Feature: gene Location: 98076-99260 bp Feature: domain Description: PRK15011 Location: 98085-99258 bp Feature: domain Description: PRK15011 Location: 98085-99258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)