myRT

myRT report for GCA_002517015.1_ASM251701v1

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Seq: NOFC01000016.1 Escherichia coli strain MOD1-EC5215 MOD1-EC5215_16_length_97843_cov_64.235, whole genome shotgun sequence (97843 bp)
Overview 1 RT 1: 23559-27302 bp Neighborhood of RT #1 [23559, 27313] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23559-24041 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: gene Location: 24175-24342 bp Feature: gene Location: 24727-25500 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-25315 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 24862-2531 5 bp Feature: gene Location: 25904-26122 bp Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: domain Description: PRK09678 Location: 25907-261 05 bp Feature: gene Location: 26213-27313 bp Feature: domain Description: D Location: 26219-27302 bp Feature: domain Description: D Location: 2621 9-27302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NOFC01000017.1 Escherichia coli strain MOD1-EC5215 MOD1-EC5215_17_length_95239_cov_69.3598, whole genome shotgun sequence (95239 bp)
Overview 1 RT 1: 49457-53339 bp Neighborhood of RT #1 [49457, 53344] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49457-49915 bp Feature: domain Description: dut Location: 49463-49910 bp Feature: domain Description: dut Location: 49463-49910 bp Feature: gene Location: 50022-50618 bp Feature: domain Description: slmA Location: 50028-50604 bp Feature: domain Description: slmA Location: 5002 8-50604 bp Feature: gene Location: 50664-51623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50799-51348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50799-51348 bp Feature: gene Location: 51921-52577 bp Feature: domain Description: pyrE Location: 51939-52572 bp Feature: domain Description: pyrE Location: 51939-52 572 bp Feature: gene Location: 52628-53344 bp Feature: domain Description: rph Location: 52631-53339 bp Feature: domain Description: rph Location: 52 631-53339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NOFC01000048.1 Escherichia coli strain MOD1-EC5215 MOD1-EC5215_48_length_21097_cov_81.0101, whole genome shotgun sequence (21097 bp)
Overview 1 RT 1: 7818-10397 bp Neighborhood of RT #1 [7818, 10402] InsE RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 7818-8237 bp Feature: domain Description: InsE Location: 7833-8217 bp Feature: domain Description: InsE Location: 783 3 -8217 bp Feature: gene Location: 8092-8508 bp Feature: gene Location: 8570-9493 bp Feature: domain Description: RVT_N Location: 8618-8861 bp Feature: domain Description: RVT_N Location: 8618-8861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8906-9476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8906-9476 bp Feature: gene Location: 9520-9927 bp Feature: gene Location: 10091-10402 bp Feature: domain Description: TnpB_IS66 Location: 10118-10397 bp Feature: domain Description: TnpB_IS66 Location: 10118-103 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)

Seq: NOFC01000051.1 Escherichia coli strain MOD1-EC5215 MOD1-EC5215_51_length_18701_cov_43.0655, whole genome shotgun sequence (18701 bp)
Overview 1 RT 1: 3079-5720 bp Neighborhood of RT #1 [3079, 5720] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3079-3336 bp Feature: gene Location: 3393-3527 bp Feature: gene Location: 3552-5252 bp Feature: domain Description: RVT_N Location: 3606-3849 bp Feature: domain Description: RVT_N Location: 3606-384 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894 -4 530 bp Feature: domain Description: GIIM Note: maturase Location: 4581-4815 bp Feature: domain Description: GIIM Note: maturase Location: 4 581-4 815 bp Feature: domain Description: HNHc Note: nucleases Location: 5046-5196 bp Feature: domain Description: HNHc Note: nucleases Location: 504 6-5196 bp Feature: gene Location: 5377-5541 bp Feature: gene Location: 5568-5720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NOFC01000055.1 Escherichia coli strain MOD1-EC5215 MOD1-EC5215_55_length_11103_cov_77.6091, whole genome shotgun sequence (11103 bp)
Overview 1 RT 1: 8760-10745 bp Neighborhood of RT #1 [8760, 10990] PHA02517 RVT-GII GIIM Feature: gene Location: 8760-9023 bp Feature: gene Location: 9081-9527 bp Feature: domain Description: PHA02517 Location: 9084-9525 bp Feature: domain Description: PHA025 17 Location: 9084-95 25 bp Feature: gene Location: 9644-10990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9740-10472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9740-10472 bp Feature: domain Description: GIIM Note: maturase Location: 10547-10745 bp Feature: domain Description: GIIM Note: maturase Location: 105 47-10745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)