myRT

myRT report for GCA_002517035.1_ASM251703v1

Download annotations/find similar RTs

Seq: NOFD01000010.1 Escherichia coli strain MOD1-EC5214 MOD1-EC5214_10_length_187150_cov_72.6946, whole genome shotgun sequence (187150 bp)
Overview 1 RT 1: 2-5258 bp Neighborhood of RT #1 [2, 5260] PRK14702 Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-190 bp Feature: domain Description: PRK14702 Location: 5-116 bp Feature: domain Description: PRK1 4702 Location: 5-1 1 6 bp Feature: gene Location: 201-785 bp Feature: domain Description: Caudo_TAP Location: 417-774 bp Feature: domain Description: Caudo_TAP Location: 41 7-774 bp Feature: gene Location: 1230-2834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1521-2112 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 521 -21 1 2 bp Feature: domain Description: TIR_2 Location: 2439-2727 bp Feature: domain Description: TIR_2 Location: 2439-2727 bp Feature: gene Location: 3194-3454 bp Feature: domain Description: PRK10597 Location: 3197-3437 bp Feature: domain Description: PRK1 0597 Location: 31 97-3437 bp Feature: gene Location: 3674-5260 bp Feature: domain Description: prfC Location: 3692-5258 bp Feature: domain Description: prfC Location: 3692-5258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), PRK14702 (insertion element IS2 transposase InsD; Provisional), prfC (TIGR00503)

Seq: NOFD01000011.1 Escherichia coli strain MOD1-EC5214 MOD1-EC5214_11_length_184133_cov_75.9102, whole genome shotgun sequence (184133 bp)
Overview 1 RT 1: 49333-53215 bp Neighborhood of RT #1 [49333, 53220] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49333-49791 bp Feature: domain Description: dut Location: 49339-49786 bp Feature: domain Description: dut Location: 49339-49786 bp Feature: gene Location: 49898-50494 bp Feature: domain Description: slmA Location: 49904-50480 bp Feature: domain Description: slmA Location: 49904-50480 bp Feature: gene Location: 50540-51499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50675-51224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50675-512 2 4 bp Feature: gene Location: 51797-52453 bp Feature: domain Description: pyrE Location: 51815-52448 bp Feature: domain Description: pyrE Location: 51815-52 448 bp Feature: gene Location: 52504-53220 bp Feature: domain Description: rph Location: 52507-53215 bp Feature: domain Description: rph Location: 52 507-532 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)