myRT

myRT report for GCA_002517195.1_ASM251719v1

Download annotations/find similar RTs

Seq: NOEN01000013.1 Escherichia coli strain MOD1-EC5324 MOD1-EC5324_13_length_113051_cov_28.8628, whole genome shotgun sequence (113051 bp)
Overview 1 RT 1: 1421-7830 bp Neighborhood of RT #1 [1421, 7835] phage_tail_N 7tmA_amine_R-like 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1421-4768 bp Feature: domain Description: phage_tail_N Location: 1424-1823 bp Feature: domain Description: phage_tail_N Location: 1 424-1 823 bp Feature: domain Description: 7tmA_amine_R-like Location: 2390-2741 bp Feature: domain Description: 7tmA_amine_R-like Location: 2390-2741 bp Feature: domain Description: 34 Location: 3521-3869 bp Feature: domain Description: 34 Location: 3521 -3869 bp Feature: domain Description: Collar Location: 4139-4277 bp Feature: domain Description: Collar Location: 41 39-4277 bp Feature: domain Description: Phage_fiber Location: 4328-4367 bp Feature: domain Description: Phage_fiber Location: 4328-4367 bp Feature: domain Description: Phage_fiber Location: 4424-4463 bp Feature: domain Description: Phage_fiber Location: 4424-4463 bp Feature: domain Description: Phage_fiber Location: 4571-4610 bp Feature: domain Description: Phage_fiber Location: 4571 -461 0 bp Feature: domain Description: Phage_fiber Location: 4616-4649 bp Feature: domain Description: Phage_fiber Location: 461 6-4649 bp Feature: gene Location: 4768-5352 bp Feature: domain Description: Caudo_TAP Location: 4990-5341 bp Feature: domain Description: Caudo_TAP Location: 4990-5341 bp Feature: gene Location: 5465-6835 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5693-6299 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 5693-6299 bp Feature: gene Location: 6813-7517 bp Feature: domain Description: SLATT_5 Location: 6975-7485 bp Feature: domain Description: SLATT_5 Location: 6975-7485 bp Feature: gene Location: 7587-7835 bp Feature: domain Description: PRK10597 Location: 7590-7830 bp Feature: domain Description: PRK1 0597 Location: 7590-7830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: NOEN01000002.1 Escherichia coli strain MOD1-EC5324 MOD1-EC5324_2_length_285752_cov_26.0948, whole genome shotgun sequence (285752 bp)
Overview 1 RT 1: 222224-226080 bp Neighborhood of RT #1 [222224, 226080] PRK15452 GIIM RVT-GII Feature: gene Location: 222224-223585 bp Feature: domain Description: PRK15452 Location: 222227-223550 bp Feature: domain Description: PRK15452 Location: 2 2 2 2 2 7-2 2 3550 bp Feature: gene Location: 223895-224407 bp Feature: domain Description: GIIM Note: maturase Location: 224015-224246 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 4015-2 2 42 46 bp Feature: gene Location: 224510-225283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224840-225281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 4840-2 2 52 81 bp Feature: gene Location: 225511-225807 bp Feature: gene Location: 225871-226080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15452 (putative protease; Provisional), GIIM (pfam08388), RVT-GII

Seq: NOEN01000069.1 Escherichia coli strain MOD1-EC5324 MOD1-EC5324_69_length_13048_cov_30.8474, whole genome shotgun sequence (13048 bp)
Overview 1 RT 1: 7194-11234 bp Neighborhood of RT #1 [7194, 11234] PHA02517 RVT-GII GIIM Feature: gene Location: 7194-7817 bp Feature: gene Location: 7996-8436 bp Feature: domain Description: PHA02517 Location: 7999-8401 bp Feature: domain Description: PHA02517 Location: 7999-8401 bp Feature: gene Location: 8565-10088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8838-9570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883 8-9570 bp Feature: domain Description: GIIM Note: maturase Location: 9645-9843 bp Feature: domain Description: GIIM Note: maturase Location: 9645-9843 bp Feature: gene Location: 10382-10753 bp Feature: gene Location: 10824-11234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)