myRT

myRT report for GCA_002517205.1_ASM251720v1

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Seq: NOEQ01000028.1 Escherichia coli strain MOD1-EC5298 MOD1-EC5298_28_length_49940_cov_25.9508, whole genome shotgun sequence (49940 bp)
Overview 1 RT 1: 39387-45644 bp Neighborhood of RT #1 [39387, 45718] P Q RVT-Retrons SIR2_2 Feature: gene Location: 39387-41153 bp Feature: domain Description: P Location: 39414-41148 bp Feature: domain Description: P Location: 3941 4-41 1 48 bp Feature: gene Location: 41153-42187 bp Feature: domain Description: Q Location: 41162-42179 bp Feature: domain Description: Q Location: 41 1 62-421 79 bp Feature: gene Location: 42232-43992 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42376-43000 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42376-43000 bp Feature: gene Location: 44152-44358 bp Feature: gene Location: 44675-45718 bp Feature: domain Description: SIR2_2 Location: 45056-45644 bp Feature: domain Description: SIR2_2 Location: 45056-45644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons, SIR2_2 (pfam13289)

Seq: NOEQ01000042.1 Escherichia coli strain MOD1-EC5298 MOD1-EC5298_42_length_27127_cov_30.2129, whole genome shotgun sequence (27127 bp)
Overview 1 RT 1: 2322-6322 bp Neighborhood of RT #1 [2322, 6330] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2322-3683 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 2 32 5-3657 bp Feature: gene Location: 3736-4107 bp Feature: gene Location: 4329-4775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: gene Location: 4823-4972 bp Feature: gene Location: 5299-6330 bp Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Feature: domain Description: Asparaginase_2 Location: 5389-632 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: NOEQ01000084.1 Escherichia coli strain MOD1-EC5298 MOD1-EC5298_84_length_2478_cov_29.2578, whole genome shotgun sequence (2478 bp)
Overview 1 RT 1: 1-2473 bp Neighborhood of RT #1 [1, 2475] YhhI YhhI YhhI group_II_RT_mat RVT-GII RVT-GII Feature: gene Location: 1-894 bp Feature: domain Description: YhhI Location: 7-352 bp Feature: domain Description: YhhI Location: 7-3 52 bp Feature: domain Description: YhhI Location: 409-763 bp Feature: domain Description: YhhI Location: 409-763 bp Feature: domain Description: YhhI Location: 763-895 bp Feature: domain Description: YhhI Location: 763 -895 bp Feature: gene Location: 1258-1509 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1264-1492 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1264-1492 bp Feature: gene Location: 1531-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-1798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 7-1798 bp Feature: gene Location: 1867-2475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203-2473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203 -2473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, YhhI (COG5433)