myRT

myRT report for GCA_002517375.1_ASM251737v1

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Seq: NOEF01000017.1 Escherichia coli strain MOD1-EC5346 MOD1-EC5346_17_length_109477_cov_53.4665, whole genome shotgun sequence (109477 bp)
Overview 1 RT 1: 85794-90431 bp Neighborhood of RT #1 [85794, 90431] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 85794-86009 bp Feature: gene Location: 86100-86381 bp Feature: domain Description: HTH_XRE Location: 86115-86280 bp Feature: domain Description: HTH_XRE Location: 861 1 5-86280 bp Feature: gene Location: 86374-87474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86515-87067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8651 5-87067 bp Feature: gene Location: 87551-89053 bp Feature: domain Description: PRK13889 Location: 87554-88133 bp Feature: domain Description: PRK1 3889 Location: 87554-881 33 bp Feature: gene Location: 89994-90431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: NOEF01000049.1 Escherichia coli strain MOD1-EC5346 MOD1-EC5346_49_length_20635_cov_79.2021, whole genome shotgun sequence (20635 bp)
Overview 1 RT 1: 12239-15598 bp Neighborhood of RT #1 [12239, 15603] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 12239-12436 bp Feature: domain Description: PRK09413 Location: 12242-12404 bp Feature: domain Description: PRK09413 Location: 12 2 42 -12 404 bp Feature: gene Location: 12491-12841 bp Feature: gene Location: 12912-14264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13233-13851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 33-13851 bp Feature: domain Description: GIIM Note: maturase Location: 13899-14130 bp Feature: domain Description: GIIM Note: maturase Location: 13899-14130 bp Feature: gene Location: 14473-14874 bp Feature: gene Location: 14974-15603 bp Feature: domain Description: PinE Location: 15049-15598 bp Feature: domain Description: PinE Location: 15049-15598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)