myRT

myRT report for GCA_002517545.1_ASM251754v1

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Seq: NODZ01000024.1 Escherichia coli strain MOD1-EC5391 MOD1-EC5391_24_length_58524_cov_30.1295, whole genome shotgun sequence (58524 bp)
Overview 1 RT 1: 29735-33615 bp Neighborhood of RT #1 [29735, 33620] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 29735-30193 bp Feature: domain Description: dut Location: 29741-30188 bp Feature: domain Description: dut Location: 29741 -301 88 bp Feature: gene Location: 30300-30896 bp Feature: domain Description: slmA Location: 30306-30882 bp Feature: domain Description: slmA Location: 30306-30882 bp Feature: gene Location: 30942-31901 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31077-31626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 077-31 626 bp Feature: gene Location: 32197-32853 bp Feature: domain Description: pyrE Location: 32215-32848 bp Feature: domain Description: pyrE Location: 3221 5-32848 bp Feature: gene Location: 32904-33620 bp Feature: domain Description: rph Location: 32907-33615 bp Feature: domain Description: rph Location: 32907-3361 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NODZ01000031.1 Escherichia coli strain MOD1-EC5391 MOD1-EC5391_31_length_42999_cov_24.1246, whole genome shotgun sequence (42999 bp)
Overview 1 RT 1: 23980-28400 bp Neighborhood of RT #1 [23980, 28400] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 23980-24219 bp Feature: gene Location: 24306-24746 bp Feature: domain Description: PRK13732 Location: 24312-24744 bp Feature: domain Description: PRK13732 Location: 2 4312 -2 4744 bp Feature: gene Location: 24941-26842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25208-26039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 08-2 6039 bp Feature: domain Description: Intron_maturas2 Location: 26153-26411 bp Feature: domain Description: Intron_maturas2 Location: 2 6153-2 6411 bp Feature: domain Description: HNHc Note: nucleases Location: 26585-26747 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6585-2 6747 bp Feature: gene Location: 27405-27947 bp Feature: gene Location: 28098-28400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)