myRT

myRT report for GCA_002517695.1_ASM251769v1

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Seq: NNWR01000012.1 Escherichia coli strain MOD1-EC6403 MOD1-EC6403_12_length_134155_cov_22.7575, whole genome shotgun sequence (134155 bp)
Overview 1 RT 1: 9773-13655 bp Neighborhood of RT #1 [9773, 13660] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9773-10231 bp Feature: domain Description: dut Location: 9779-10226 bp Feature: domain Description: dut Location: 9779-1 0226 bp Feature: gene Location: 10338-10934 bp Feature: domain Description: slmA Location: 10344-10920 bp Feature: domain Description: slmA Location: 1 0344-1 0920 bp Feature: gene Location: 10980-11939 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11115-11664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 1 5-1 1 664 bp Feature: gene Location: 12237-12893 bp Feature: domain Description: pyrE Location: 12255-12888 bp Feature: domain Description: pyrE Location: 1 2255-1 2888 bp Feature: gene Location: 12944-13660 bp Feature: domain Description: rph Location: 12947-13655 bp Feature: domain Description: rph Location: 1 2947-1 3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NNWR01000019.1 Escherichia coli strain MOD1-EC6403 MOD1-EC6403_19_length_80161_cov_21.0647, whole genome shotgun sequence (80160 bp)
Overview 1 RT 1: 71008-78206 bp Neighborhood of RT #1 [71008, 78206] AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA autotrans_barl RVT-Retrons DUF932 Feature: gene Location: 71008-73908 bp Feature: domain Description: AIDA Location: 71146-71257 bp Feature: domain Description: AIDA Location: 71146-712 57 bp Feature: domain Description: AIDA Location: 71374-71473 bp Feature: domain Description: AIDA Location: 71374-71473 bp Feature: domain Description: AIDA Location: 71503-71647 bp Feature: domain Description: AIDA Location: 71503-71647 bp Feature: domain Description: AIDA Location: 71692-71812 bp Feature: domain Description: AIDA Location: 71692 -71812 bp Feature: domain Description: AIDA Location: 71902-72082 bp Feature: domain Description: AIDA Location: 71902 -72 082 bp Feature: domain Description: AIDA Location: 72193-72346 bp Feature: domain Description: AIDA Location: 72 193-72 346 bp Feature: domain Description: AIDA Location: 72394-72580 bp Feature: domain Description: AIDA Location: 72 394-72 580 bp Feature: domain Description: AIDA Location: 72676-72859 bp Feature: domain Description: AIDA Location: 72 676-72 859 bp Feature: domain Description: AIDA Location: 72967-73063 bp Feature: domain Description: AIDA Location: 72 967-73063 bp Feature: domain Description: AIDA Location: 73111-73234 bp Feature: domain Description: AIDA Location: 73111-732 34 bp Feature: domain Description: AIDA Location: 73270-73456 bp Feature: domain Description: AIDA Location: 732 70-73456 bp Feature: domain Description: AIDA Location: 73465-73618 bp Feature: domain Description: AIDA Location: 73465-73618 bp Feature: domain Description: AIDA Location: 73660-73795 bp Feature: domain Description: AIDA Location: 73660-73795 bp Feature: gene Location: 73937-74263 bp Feature: domain Description: autotrans_barl Location: 73958-74261 bp Feature: domain Description: autotrans_barl Location: 73958-742 61 bp Feature: gene Location: 74907-76631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75045-75669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75045-75669 bp Feature: gene Location: 76882-77703 bp Feature: domain Description: DUF932 Location: 76993-77668 bp Feature: domain Description: DUF932 Location: 76993-77668 bp Feature: gene Location: 77787-78206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIDA (pfam16168), autotrans_barl (TIGR01414), RVT-Retrons, DUF932 (pfam06067)

Seq: NNWR01000034.1 Escherichia coli strain MOD1-EC6403 MOD1-EC6403_34_length_35973_cov_21.0389, whole genome shotgun sequence (35973 bp)
Overview 1 RT 1: 3-2420 bp Neighborhood of RT #1 [3, 2425] RVT-AbiP2 Q Feature: gene Location: 3-995 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 420-873 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 420-873 bp Feature: gene Location: 1190-1342 bp Feature: gene Location: 1391-2425 bp Feature: domain Description: Q Location: 1394-2420 bp Feature: domain Description: Q Location: 13 94-2420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Q (PHA02536)

Seq: NNWR01000086.1 Escherichia coli strain MOD1-EC6403 MOD1-EC6403_86_length_7120_cov_22.8579, whole genome shotgun sequence (7120 bp)
Overview 1 RT 1: 2-2572 bp Neighborhood of RT #1 [2, 2637] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-193 bp Feature: domain Description: PHA02517 Location: 5-194 bp Feature: domain Description: PHA02517 Location: 5-194 bp Feature: gene Location: 310-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583-1315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583-1315 bp Feature: domain Description: GIIM Note: maturase Location: 1390-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1390-1588 bp Feature: gene Location: 1787-2212 bp Feature: gene Location: 2425-2637 bp Feature: domain Description: PHA02517 Location: 2428-2572 bp Feature: domain Description: PHA02517 Location: 24 28-2572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)