myRT

myRT report for GCA_002518085.1_ASM251808v1

Download annotations/find similar RTs

Seq: NOCZ01000101.1 Escherichia coli strain MOD1-EC5777 MOD1-EC5777_101_length_2669_cov_300.908, whole genome shotgun sequence (2669 bp)
Overview 1 RT 1: 270-2420 bp Neighborhood of RT #1 [270, 2515] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 -1 71 2 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1 826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NOCZ01000033.1 Escherichia coli strain MOD1-EC5777 MOD1-EC5777_33_length_39468_cov_142.371, whole genome shotgun sequence (39468 bp)
Overview 1 RT 1: 550-4576 bp Neighborhood of RT #1 [550, 4578] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 550-2154 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 841-1432 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 841-1432 bp Feature: domain Description: TIR_2 Location: 1759-2092 bp Feature: domain Description: TIR_2 Location: 1759-2 092 bp Feature: gene Location: 2512-2772 bp Feature: domain Description: PRK10597 Location: 2515-2755 bp Feature: domain Description: PRK10597 Location: 2 515-2 755 bp Feature: gene Location: 2992-4578 bp Feature: domain Description: prfC Location: 3010-4576 bp Feature: domain Description: prfC Location: 3010-4576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)

Seq: NOCZ01000052.1 Escherichia coli strain MOD1-EC5777 MOD1-EC5777_52_length_18272_cov_77.638, whole genome shotgun sequence (18272 bp)
Overview 1 RT 1: 2322-6322 bp Neighborhood of RT #1 [2322, 6330] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2322-3683 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 23 25-3 657 bp Feature: gene Location: 3736-4107 bp Feature: gene Location: 4329-4775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 5-473 7 bp Feature: gene Location: 4823-4972 bp Feature: gene Location: 5299-6330 bp Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Feature: domain Description: Asparaginase_2 Location: 53 89-63 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)