myRT

myRT report for GCA_002518325.1_ASM251832v1

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Seq: NODO01000017.1 Escherichia coli strain MOD1-EC5762 MOD1-EC5762_17_length_108962_cov_31.6619, whole genome shotgun sequence (108960 bp)
Overview 1 RT 1: 49333-53214 bp Neighborhood of RT #1 [49333, 53219] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49333-49791 bp Feature: domain Description: dut Location: 49339-49786 bp Feature: domain Description: dut Location: 49339-49786 bp Feature: gene Location: 49898-50494 bp Feature: domain Description: slmA Location: 49904-50480 bp Feature: domain Description: slmA Location: 49904-50480 bp Feature: gene Location: 50540-51499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50675-51224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50675-51 224 bp Feature: gene Location: 51797-52453 bp Feature: domain Description: pyrE Location: 51815-52448 bp Feature: domain Description: pyrE Location: 51 81 5-52448 bp Feature: gene Location: 52503-53219 bp Feature: domain Description: rph Location: 52506-53214 bp Feature: domain Description: rph Location: 52506-5321 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NODO01000074.1 Escherichia coli strain MOD1-EC5762 MOD1-EC5762_74_length_5510_cov_29.8721, whole genome shotgun sequence (5510 bp)
Overview 1 RT 1: 2236-5402 bp Neighborhood of RT #1 [2236, 5407] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2236-3597 bp Feature: domain Description: DcuC Location: 2239-3571 bp Feature: domain Description: DcuC Location: 2 2 39-3571 bp Feature: gene Location: 3650-4021 bp Feature: gene Location: 4243-4689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4549-4651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4549-4651 bp Feature: gene Location: 4737-4886 bp Feature: gene Location: 5213-5407 bp Feature: domain Description: Asparaginase_2 Location: 5300-5402 bp Feature: domain Description: Asparaginase_2 Location: 5300-5402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)