myRT

myRT report for GCA_002518725.1_ASM251872v1

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Seq: NOMT01000022.1 Escherichia coli strain MOD1-EC6981 MOD1-EC6981_22_length_65455_cov_36.3534, whole genome shotgun sequence (65455 bp)
Overview 1 RT 1: 530-4155 bp Neighborhood of RT #1 [530, 4155] DUF3800 RVT-Retrons Feature: gene Location: 530-1300 bp Feature: domain Description: DUF3800 Location: 545-1070 bp Feature: domain Description: DUF3800 Location: 545-1 070 bp Feature: gene Location: 1669-3393 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1807-2431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 807-2431 bp Feature: gene Location: 3594-3851 bp Feature: gene Location: 3952-4155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-Retrons

Seq: NOMT01000002.1 Escherichia coli strain MOD1-EC6981 MOD1-EC6981_2_length_431100_cov_34.3553, whole genome shotgun sequence (431100 bp)
Overview 1 RT 1: 397717-402036 bp Neighborhood of RT #1 [397717, 402053] galF DDE_Tnp_1_assoc RVT-GII RVT-GII RVT-GII YhhI YhhI YhhI Feature: gene Location: 397717-398610 bp Feature: domain Description: galF Location: 397720-398608 bp Feature: domain Description: galF Location: 39772 0-398608 bp Feature: gene Location: 399133-399360 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 399148-399313 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 399148-399313 bp Feature: gene Location: 400091-400312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400256-400301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4002 56-400301 bp Feature: gene Location: 400318-400458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400321-400453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40032 1-400453 bp Feature: gene Location: 400713-400898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400722-400875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40072 2 -400875 bp Feature: gene Location: 401584-401862 bp Feature: domain Description: YhhI Location: 401596-401719 bp Feature: domain Description: YhhI Location: 401596-401719 bp Feature: domain Description: YhhI Location: 401719-401803 bp Feature: domain Description: YhhI Location: 401719-401803 bp Feature: gene Location: 401865-402053 bp Feature: domain Description: YhhI Location: 401874-402036 bp Feature: domain Description: YhhI Location: 401874-402 036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galF (TIGR01105), DDE_Tnp_1_assoc (pfam13808), RVT-GII, YhhI (COG5433)

Seq: NOMT01000044.1 Escherichia coli strain MOD1-EC6981 MOD1-EC6981_44_length_7826_cov_44.0103, whole genome shotgun sequence (7826 bp)
Overview 1 RT 1: 140-4664 bp Neighborhood of RT #1 [140, 4672] PHA02517 RVT-GII GIIM PHA02517 PRK13698 Feature: gene Location: 140-565 bp Feature: domain Description: PHA02517 Location: 164-500 bp Feature: domain Description: PHA02517 Location: 164-500 bp Feature: gene Location: 1157-2680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430-2162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 0-2162 bp Feature: domain Description: GIIM Note: maturase Location: 2237-2435 bp Feature: domain Description: GIIM Note: maturase Location: 223 7-243 5 bp Feature: gene Location: 2845-3249 bp Feature: domain Description: PHA02517 Location: 2848-3232 bp Feature: domain Description: PHA02517 Location: 2848-3 23 2 bp Feature: gene Location: 3701-4672 bp Feature: domain Description: PRK13698 Location: 3704-4664 bp Feature: domain Description: PRK13 698 Location: 3 704-4664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK13698 (ParB/RepB/Spo0J family plasmid partition protein)