myRT

myRT report for GCA_002519035.1_ASM251903v1

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Seq: NONK01000025.1 Escherichia coli strain MOD1-EC6961 MOD1-EC6961_25_length_69321_cov_54.3716, whole genome shotgun sequence (69321 bp)
Overview 1 RT 1: 60103-63587 bp Neighborhood of RT #1 [60103, 63587] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 60103-60255 bp Feature: gene Location: 60325-61227 bp Feature: domain Description: DUF1281 Location: 60394-60922 bp Feature: domain Description: DUF1 281 Location: 60394-60922 bp Feature: domain Description: DUF1281_C Location: 60928-61168 bp Feature: domain Description: DUF1 281 _C Location: 60928-61 1 68 bp Feature: gene Location: 61304-63028 bp Feature: domain Description: RVT_N Location: 61361-61598 bp Feature: domain Description: RVT_N Location: 61 361 -61 598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61649-62297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 649-62297 bp Feature: domain Description: YkfC Location: 62429-62585 bp Feature: domain Description: YkfC Location: 62429-62585 bp Feature: domain Description: HNHc Note: nucleases Location: 62813-62972 bp Feature: domain Description: HNHc Note: nucleases Location: 6281 3-62972 bp Feature: gene Location: 63069-63209 bp Feature: gene Location: 63291-63587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NONK01000029.1 Escherichia coli strain MOD1-EC6961 MOD1-EC6961_29_length_57448_cov_32.4204, whole genome shotgun sequence (57448 bp)
Overview 1 RT 1: 15251-20164 bp Neighborhood of RT #1 [15251, 20175] PRK09692 RVT-UG7 COG3378 Feature: gene Location: 15251-15403 bp Feature: gene Location: 15679-16863 bp Feature: domain Description: PRK09692 Location: 15685-16840 bp Feature: domain Description: PRK09692 Location: 15685-16840 bp Feature: gene Location: 16856-18484 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 17264-17693 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 172 64-17693 bp Feature: gene Location: 18481-19221 bp Feature: gene Location: 19420-20175 bp Feature: domain Description: COG3378 Location: 19426-20164 bp Feature: domain Description: COG3378 Location: 1942 6-2 0164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, COG3378 (Phage- or plasmid-associated DNA primase )

Seq: NONK01000083.1 Escherichia coli strain MOD1-EC6961 MOD1-EC6961_83_length_7695_cov_45.8099, whole genome shotgun sequence (7695 bp)
Overview 1 RT 1: 680-3731 bp Neighborhood of RT #1 [680, 3856] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 680-1099 bp Feature: domain Description: PHA02517 Location: 683-1088 bp Feature: domain Description: PHA02517 Location: 683 -1088 bp Feature: gene Location: 1222-1407 bp Feature: gene Location: 1580-2281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586-2141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586-2141 bp Feature: gene Location: 2253-3269 bp Feature: domain Description: YkfC Location: 2949-3219 bp Feature: domain Description: YkfC Location: 2949-3 219 bp Feature: gene Location: 3350-3856 bp Feature: domain Description: HlyC Location: 3371-3731 bp Feature: domain Description: HlyC Location: 3 3 71-3 73 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)