myRT

myRT report for GCA_002519265.1_ASM251926v1

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Seq: NONV01000003.1 Escherichia coli strain MOD1-EC6949 MOD1-EC6949_3_length_331165_cov_55.6736, whole genome shotgun sequence (331165 bp)
Overview 1 RT 1: 14431-18978 bp Neighborhood of RT #1 [14431, 19001] RVT-Retrons PBP2_CrgA_like_5 XdhC Feature: gene Location: 14431-14625 bp Feature: gene Location: 14908-15876 bp Feature: gene Location: 15863-16795 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15965-16556 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5965-1 6556 bp Feature: gene Location: 17656-18066 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 17728-18040 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 1 7728-1 8040 bp Feature: gene Location: 18045-19001 bp Feature: domain Description: XdhC Location: 18123-18978 bp Feature: domain Description: XdhC Location: 1 81 23-1 8978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: NONV01000054.1 Escherichia coli strain MOD1-EC6949 MOD1-EC6949_54_length_7785_cov_21.3083, whole genome shotgun sequence (7785 bp)
Overview 1 RT 1: 4772-7234 bp Neighborhood of RT #1 [4772, 7332] RVT-GII GIIM RAYT Feature: gene Location: 4772-4909 bp Feature: gene Location: 4999-5268 bp Feature: gene Location: 5293-6639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581-6199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581-6199 bp Feature: domain Description: GIIM Note: maturase Location: 6247-6478 bp Feature: domain Description: GIIM Note: maturase Location: 62 47-6478 bp Feature: gene Location: 6793-7332 bp Feature: domain Description: RAYT Location: 6871-7234 bp Feature: domain Description: RAYT Location: 6871-72 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)

Seq: NONV01000074.1 Escherichia coli strain MOD1-EC6949 MOD1-EC6949_74_length_3282_cov_30.9856, whole genome shotgun sequence (3282 bp)
Overview 1 RT 1: 170-3281 bp Neighborhood of RT #1 [170, 3280] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 170-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443 -1175 bp Feature: domain Description: GIIM Note: maturase Location: 1253-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1253 -1448 bp Feature: gene Location: 2285-2872 bp Feature: domain Description: PHA02517 Location: 2471-2807 bp Feature: domain Description: PHA02517 Location: 2471-2807 bp Feature: gene Location: 2678-3280 bp Feature: domain Description: PHA02517 Location: 2864-3281 bp Feature: domain Description: PHA02517 Location: 2864-3 281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)