myRT

myRT report for GCA_002519465.1_ASM251946v1

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Seq: NOOE01000036.1 Escherichia coli strain MOD1-EC6940 MOD1-EC6940_36_length_35923_cov_34.0047, whole genome shotgun sequence (35923 bp)
Overview 1 RT 1: 15572-19413 bp Neighborhood of RT #1 [15572, 19511] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 15572-15724 bp Feature: domain Description: rve_2 Location: 15602-15710 bp Feature: domain Description: rve_2 Location: 1 5602-1 571 0 bp Feature: gene Location: 15997-16302 bp Feature: gene Location: 16345-17733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16675-17293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6675-1 7293 bp Feature: domain Description: GIIM Note: maturase Location: 17341-17572 bp Feature: domain Description: GIIM Note: maturase Location: 1 7341 -1 7572 bp Feature: gene Location: 18120-18734 bp Feature: domain Description: InsG Location: 18123-18714 bp Feature: domain Description: InsG Location: 1 81 23-1 871 4 bp Feature: gene Location: 18738-19511 bp Feature: domain Description: Transposase_20 Location: 19167-19413 bp Feature: domain Description: Transposase_20 Location: 1 91 67-1 941 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: NOOE01000039.1 Escherichia coli strain MOD1-EC6940 MOD1-EC6940_39_length_29124_cov_45.9351, whole genome shotgun sequence (29124 bp)
Overview 1 RT 1: 4803-7833 bp Neighborhood of RT #1 [4803, 7883] RVT-GII COG3547 COG3547 Feature: gene Location: 4803-5003 bp Feature: gene Location: 5011-5151 bp Feature: gene Location: 5185-6642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5593-6280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5593-62 80 bp Feature: gene Location: 6881-7276 bp Feature: domain Description: COG3547 Location: 6899-7190 bp Feature: domain Description: COG3547 Location: 6899-7190 bp Feature: gene Location: 7335-7883 bp Feature: domain Description: COG3547 Location: 7347-7833 bp Feature: domain Description: COG3547 Location: 7347-7833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: NOOE01000054.1 Escherichia coli strain MOD1-EC6940 MOD1-EC6940_54_length_10766_cov_45.3191, whole genome shotgun sequence (10766 bp)
Overview 1 RT 1: 3043-10742 bp Neighborhood of RT #1 [3043, 10765] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII fil_hemag_20aa fil_hemag_20aa Feature: gene Location: 3043-3318 bp Feature: gene Location: 3514-3675 bp Feature: gene Location: 3757-4467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 958-4459 bp Feature: gene Location: 4462-4881 bp Feature: gene Location: 4919-5308 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5024-5267 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5024-5267 bp Feature: gene Location: 6727-7377 bp Feature: domain Description: HTH_23 Location: 6778-6877 bp Feature: domain Description: HTH_23 Location: 6778-6877 bp Feature: domain Description: InsE Location: 7003-7354 bp Feature: domain Description: InsE Location: 7003 -73 54 bp Feature: gene Location: 7749-7952 bp Feature: gene Location: 8359-8733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8365-8536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 65-853 6 bp Feature: gene Location: 8749-9561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9022-9478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9022-9478 bp Feature: gene Location: 9682-9885 bp Feature: gene Location: 10172-10765 bp Feature: domain Description: fil_hemag_20aa Location: 10178-10250 bp Feature: domain Description: fil_hemag_20aa Location: 10178-10250 bp Feature: domain Description: fil_hemag_20aa Location: 10661-10742 bp Feature: domain Description: fil_hemag_20aa Location: 10661-10742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963), fil_hemag_20aa (TIGR01731)