myRT

myRT report for GCA_002519755.1_ASM251975v1

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Seq: NOOT01000013.1 Escherichia coli strain MOD1-EC6898 MOD1-EC6898_13_length_133299_cov_64.9135, whole genome shotgun sequence (133299 bp)
Overview 1 RT 1: 47127-51010 bp Neighborhood of RT #1 [47127, 51015] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47127-47585 bp Feature: domain Description: dut Location: 47133-47580 bp Feature: domain Description: dut Location: 471 33-47580 bp Feature: gene Location: 47692-48288 bp Feature: domain Description: slmA Location: 47698-48274 bp Feature: domain Description: slmA Location: 47698-48274 bp Feature: gene Location: 48334-49293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48469-49018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48469-4901 8 bp Feature: gene Location: 49591-50247 bp Feature: domain Description: pyrE Location: 49609-50242 bp Feature: domain Description: pyrE Location: 49609-50242 bp Feature: gene Location: 50299-51015 bp Feature: domain Description: rph Location: 50302-51010 bp Feature: domain Description: rph Location: 50302-51 01 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NOOT01000059.1 Escherichia coli strain MOD1-EC6898 MOD1-EC6898_59_length_3445_cov_102.354, whole genome shotgun sequence (3445 bp)
Overview 1 RT 1: 2-3217 bp Neighborhood of RT #1 [2, 3282] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-154 bp Feature: gene Location: 194-640 bp Feature: domain Description: PHA02517 Location: 197-638 bp Feature: domain Description: PHA02 517 Location: 197-638 bp Feature: gene Location: 757-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1762 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2035 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2 035 bp Feature: gene Location: 2234-2659 bp Feature: gene Location: 2872-3282 bp Feature: domain Description: PHA02517 Location: 2878-3217 bp Feature: domain Description: PHA02 517 Location: 2 878-32 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)