myRT

myRT report for GCA_002519975.1_ASM251997v1

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Seq: NOPE01000058.1 Escherichia coli strain MOD1-EC6885 MOD1-EC6885_58_length_20390_cov_41.962, whole genome shotgun sequence (20390 bp)
Overview 1 RT 1: 2437-7318 bp Neighborhood of RT #1 [2437, 7323] RVT-UG4 RVT-UG4 AfaD-like PRK15223 Feature: gene Location: 2437-2670 bp Feature: gene Location: 2686-3180 bp Feature: gene Location: 3231-3488 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3234-3384 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3234-3384 bp Feature: gene Location: 3568-4110 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3901-4087 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3901 -4087 bp Feature: gene Location: 4271-4723 bp Feature: domain Description: AfaD-like Location: 4358-4703 bp Feature: domain Description: AfaD-like Location: 4358-4703 bp Feature: gene Location: 4738-7323 bp Feature: domain Description: PRK15223 Location: 4795-7318 bp Feature: domain Description: PRK1 5223 Location: 4795-731 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, AfaD-like (cd18776), PRK15223 (fimbrial biogenesis outer membrane usher protein)

Seq: NOPE01000086.1 Escherichia coli strain MOD1-EC6885 MOD1-EC6885_86_length_7474_cov_37.9447, whole genome shotgun sequence (7474 bp)
Overview 1 RT 1: 4462-6923 bp Neighborhood of RT #1 [4462, 7021] RVT-GII GIIM RAYT Feature: gene Location: 4462-4599 bp Feature: gene Location: 4689-4958 bp Feature: gene Location: 4983-6329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5271-5889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 71-5889 bp Feature: domain Description: GIIM Note: maturase Location: 5937-6168 bp Feature: domain Description: GIIM Note: maturase Location: 5937-6168 bp Feature: gene Location: 6482-7021 bp Feature: domain Description: RAYT Location: 6560-6923 bp Feature: domain Description: RAYT Location: 6560-692 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)