myRT

myRT report for GCA_002520015.1_ASM252001v1

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Seq: NOPG01000047.1 Escherichia coli strain MOD1-EC6883 MOD1-EC6883_47_length_9373_cov_31.4053, whole genome shotgun sequence (9373 bp)
Overview 1 RT 1: 120-3946 bp Neighborhood of RT #1 [120, 3946] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 120-638 bp Feature: domain Description: DDE_Tnp_IS66 Location: 138-483 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 38-483 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 504-615 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 504-61 5 bp Feature: gene Location: 773-985 bp Feature: domain Description: PHA02517 Location: 776-920 bp Feature: domain Description: PHA0251 7 Location: 776-920 bp Feature: gene Location: 1577-3100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850-2582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 850-2582 bp Feature: domain Description: GIIM Note: maturase Location: 2657-2855 bp Feature: domain Description: GIIM Note: maturase Location: 2657-2855 bp Feature: gene Location: 3217-3663 bp Feature: domain Description: PHA02517 Location: 3220-3661 bp Feature: domain Description: PHA0251 7 Location: 3220-3661 bp Feature: gene Location: 3647-3946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NOPG01000005.1 Escherichia coli strain MOD1-EC6883 MOD1-EC6883_5_length_265265_cov_50.3866, whole genome shotgun sequence (265265 bp)
Overview 1 RT 1: 46997-50938 bp Neighborhood of RT #1 [46997, 50938] RVT-Retrons Feature: gene Location: 46997-47236 bp Feature: gene Location: 47543-47719 bp Feature: gene Location: 47792-49564 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47951-48569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47951-48569 bp Feature: gene Location: 49586-49753 bp Feature: gene Location: 49799-50938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons