myRT

myRT report for GCA_002520995.1_ASM252099v1

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Seq: NORE01000051.1 Escherichia coli strain MOD1-EC6804 MOD1-EC6804_51_length_28206_cov_51.1721, whole genome shotgun sequence (28206 bp)
Overview 1 RT 1: 1-4368 bp Neighborhood of RT #1 [1, 4385] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-UG28 CbtA_toxin CbeA_antitoxin Feature: gene Location: 1-1119 bp Feature: domain Description: DDE_Tnp_IS66 Location: 109-964 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 09-964 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 985-1096 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 985-1 096 bp Feature: gene Location: 1522-1767 bp Feature: gene Location: 1858-3360 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2146-2785 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 21 46-2785 bp Feature: gene Location: 3664-3981 bp Feature: domain Description: CbtA_toxin Location: 3667-3973 bp Feature: domain Description: CbtA_toxin Location: 3667-3973 bp Feature: gene Location: 4020-4385 bp Feature: domain Description: CbeA_antitoxin Location: 4071-4368 bp Feature: domain Description: CbeA_antitoxin Location: 4071 -4368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-UG28, CbtA_toxin (pfam06755), CbeA_antitoxin (pfam06154)

Seq: NORE01000078.1 Escherichia coli strain MOD1-EC6804 MOD1-EC6804_78_length_4891_cov_88.6487, whole genome shotgun sequence (4891 bp)
Overview 1 RT 1: 2-4531 bp Neighborhood of RT #1 [2, 4533] PHA02517 RVT-GII GIIM PHA02517 PRK08026 PRK08026 Feature: gene Location: 2-214 bp Feature: gene Location: 362-574 bp Feature: domain Description: PHA02517 Location: 365-509 bp Feature: domain Description: PHA02 517 Location: 365-509 bp Feature: gene Location: 1166-2689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439-2171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439-2 171 bp Feature: domain Description: GIIM Note: maturase Location: 2246-2444 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 46-2 444 bp Feature: gene Location: 2866-3246 bp Feature: domain Description: PHA02517 Location: 2869-3238 bp Feature: domain Description: PHA02 517 Location: 2 869-32 38 bp Feature: gene Location: 3415-4533 bp Feature: domain Description: PRK08026 Location: 3418-3967 bp Feature: domain Description: PRK0802 6 Location: 3418-3967 bp Feature: domain Description: PRK08026 Location: 4093-4531 bp Feature: domain Description: PRK0802 6 Location: 4093-4531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK08026 (FliC/FljB family flagellin)