myRT

myRT report for GCA_002521055.1_ASM252105v1

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Seq: NORG01000015.1 Escherichia coli strain MOD1-EC6802 MOD1-EC6802_15_length_108443_cov_49.9319, whole genome shotgun sequence (108443 bp)
Overview 1 RT 1: 105176-107730 bp Neighborhood of RT #1 [105176, 107768] Pox_D5 RVT-Retrons TIR_2 Feature: gene Location: 105176-105352 bp Feature: gene Location: 105747-105899 bp Feature: domain Description: Pox_D5 Location: 105756-105873 bp Feature: domain Description: Pox_D5 Location: 1 05756-1 05873 bp Feature: gene Location: 106137-107768 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106452-107049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 06452-1 07049 bp Feature: domain Description: TIR_2 Location: 107373-107730 bp Feature: domain Description: TIR_2 Location: 1 07373-1 07730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676)

Seq: NORG01000003.1 Escherichia coli strain MOD1-EC6802 MOD1-EC6802_3_length_327811_cov_46.6527, whole genome shotgun sequence (327811 bp)
Overview 1 RT 1: 178898-184374 bp Neighborhood of RT #1 [178898, 184374] Q RVT-Retrons RVT-AbiP2 Feature: gene Location: 178898-179917 bp Feature: domain Description: Q Location: 178901-179912 bp Feature: domain Description: Q Location: 178901-179912 bp Feature: gene Location: 179960-180667 bp Feature: gene Location: 180664-181854 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180814-181396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180814-181396 bp Feature: gene Location: 182405-183133 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 182822-183128 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 182 82 2 -18312 8 bp Feature: gene Location: 183196-183948 bp Feature: gene Location: 184114-184374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2

Seq: NORG01000042.1 Escherichia coli strain MOD1-EC6802 MOD1-EC6802_42_length_13206_cov_56.1613, whole genome shotgun sequence (13206 bp)
Overview 1 RT 1: 3-3695 bp Neighborhood of RT #1 [3, 3703] InsE RVT-GII GIIM PHA02517 COG4453 Feature: gene Location: 3-332 bp Feature: domain Description: InsE Location: 6-306 bp Feature: domain Description: InsE Location: 6-3 06 bp Feature: gene Location: 453-824 bp Feature: gene Location: 1118-2641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391-2123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 91-2123 bp Feature: domain Description: GIIM Note: maturase Location: 2198-2396 bp Feature: domain Description: GIIM Note: maturase Location: 2198-23 96 bp Feature: gene Location: 2764-3219 bp Feature: domain Description: PHA02517 Location: 2767-3175 bp Feature: domain Description: PHA02517 Location: 2767-3 175 bp Feature: gene Location: 3434-3703 bp Feature: domain Description: COG4453 Location: 3440-3695 bp Feature: domain Description: COG4453 Location: 3 440-3 695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG4453 (Uncharacterized conserved protein, DUF1778 family )