myRT

myRT report for GCA_002521195.1_ASM252119v1

Download annotations/find similar RTs

Seq: NOSE01000014.1 Escherichia coli strain MOD1-EC6771 MOD1-EC6771_14_length_122985_cov_42.7494, whole genome shotgun sequence (122985 bp)
Overview 1 RT 1: 77137-81657 bp Neighborhood of RT #1 [77137, 81881] RVT-GII met_A_Alw26 Feature: gene Location: 77137-77289 bp Feature: gene Location: 77430-77858 bp Feature: gene Location: 78285-78551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78294-78414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78294-7841 4 bp Feature: gene Location: 79040-79636 bp Feature: gene Location: 79629-81881 bp Feature: domain Description: met_A_Alw26 Location: 79956-81657 bp Feature: domain Description: met_A_Alw26 Location: 79956-81 657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, met_A_Alw26 (TIGR02987)

Seq: NOSE01000027.1 Escherichia coli strain MOD1-EC6771 MOD1-EC6771_27_length_57314_cov_37.933, whole genome shotgun sequence (57314 bp)
Overview 1 RT 1: 50507-57195 bp Neighborhood of RT #1 [50507, 57260] gnd YhhI YhhI YhhI RVT-GII GIIM RVT-GII WcaA Feature: gene Location: 50507-51913 bp Feature: domain Description: gnd Location: 50522-51911 bp Feature: domain Description: gnd Location: 5052 2 -51911 bp Feature: gene Location: 52067-53203 bp Feature: domain Description: YhhI Location: 52070-52433 bp Feature: domain Description: YhhI Location: 52 070-52 433 bp Feature: domain Description: YhhI Location: 52490-52844 bp Feature: domain Description: YhhI Location: 52 490-52 844 bp Feature: domain Description: YhhI Location: 52880-53123 bp Feature: domain Description: YhhI Location: 52 880-5312 3 bp Feature: gene Location: 53410-54039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53416-53650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53416-53650 bp Feature: domain Description: GIIM Note: maturase Location: 53740-53947 bp Feature: domain Description: GIIM Note: maturase Location: 53740-53947 bp Feature: gene Location: 54021-54908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54474-54840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54474-54840 bp Feature: gene Location: 55268-56134 bp Feature: gene Location: 56478-57260 bp Feature: domain Description: WcaA Location: 56499-57195 bp Feature: domain Description: WcaA Location: 56499-57195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gnd (TIGR00873), YhhI (COG5433), RVT-GII, GIIM (pfam08388), WcaA (TIGR04017)

Seq: NOSE01000053.1 Escherichia coli strain MOD1-EC6771 MOD1-EC6771_53_length_20007_cov_18.9248, whole genome shotgun sequence (20007 bp)
Overview 1 RT 1: 17471-19825 bp Neighborhood of RT #1 [17471, 19935] RVT-GII Intron_maturas2 Feature: gene Location: 17471-17677 bp Feature: gene Location: 18011-18220 bp Feature: gene Location: 18355-19935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18622-19453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18622-19453 bp Feature: domain Description: Intron_maturas2 Location: 19567-19825 bp Feature: domain Description: Intron_maturas2 Location: 19567-19825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: NOSE01000060.1 Escherichia coli strain MOD1-EC6771 MOD1-EC6771_60_length_14352_cov_28.9097, whole genome shotgun sequence (14352 bp)
Overview 1 RT 1: 3770-7838 bp Neighborhood of RT #1 [3770, 7888] TIGR02646 COG3950 COG3950 RVT-Retrons DEDD_Tnp_IS110 Feature: gene Location: 3770-4420 bp Feature: domain Description: TIGR02646 Location: 3836-4235 bp Feature: domain Description: TIGR0264 6 Location: 3836-4 235 bp Feature: gene Location: 4423-6075 bp Feature: domain Description: COG3950 Location: 4621-4774 bp Feature: domain Description: COG3950 Location: 4 621-4 774 bp Feature: domain Description: COG3950 Location: 5002-5923 bp Feature: domain Description: COG3950 Location: 5002-5923 bp Feature: gene Location: 6072-7007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6174-6774 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6174 -6774 bp Feature: gene Location: 7418-7681 bp Feature: gene Location: 7571-7888 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 7610-7838 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 7610-7838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DEDD_Tnp_IS110 (pfam01548)

Seq: NOSE01000064.1 Escherichia coli strain MOD1-EC6771 MOD1-EC6771_64_length_10159_cov_41.8937, whole genome shotgun sequence (10159 bp)
Overview 1 RT 1: 261-9449 bp Neighborhood of RT #1 [261, 9892] RVT-GII GIIM PAAR_2 RhsA RHS_repeat RhsA RhsA VgrG Feature: gene Location: 261-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1455-1665 bp Feature: domain Description: GIIM Note: maturase Location: 145 5 -1665 bp Feature: gene Location: 3497-7717 bp Feature: domain Description: PAAR_2 Location: 3503-3584 bp Feature: domain Description: PAAR_2 Location: 35 03-35 84 bp Feature: domain Description: RhsA Location: 4082-4529 bp Feature: domain Description: RhsA Location: 4082-45 29 bp Feature: domain Description: RHS_repeat Location: 4592-4682 bp Feature: domain Description: RHS_repeat Location: 45 92-4682 bp Feature: domain Description: RhsA Location: 4751-5087 bp Feature: domain Description: RhsA Location: 475 1-5 087 bp Feature: domain Description: RhsA Location: 5114-7283 bp Feature: domain Description: RhsA Location: 5 114-7283 bp Feature: gene Location: 7784-9892 bp Feature: domain Description: VgrG Location: 7790-9449 bp Feature: domain Description: VgrG Location: 7790-9449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), VgrG (COG3501)

Seq: NOSE01000090.1 Escherichia coli strain MOD1-EC6771 MOD1-EC6771_90_length_2272_cov_195.619, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-16 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)