myRT

myRT report for GCA_002521225.1_ASM252122v1

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Seq: NOSL01000112.1 Escherichia coli strain MOD1-EC6763 MOD1-EC6763_112_length_2271_cov_149.116, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-2268 bp Neighborhood of RT #1 [92, 2268] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1 097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72-1 370 bp Feature: gene Location: 1909-2268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOSL01000114.1 Escherichia coli strain MOD1-EC6763 MOD1-EC6763_114_length_2159_cov_26.7008, whole genome shotgun sequence (2159 bp)
Overview 1 RT 1: 1-1983 bp Neighborhood of RT #1 [1, 2021] PRK15434 RVT-GII IS285 Feature: gene Location: 1-219 bp Feature: domain Description: PRK15434 Location: 4-199 bp Feature: domain Description: PRK15434 Location: 4-199 bp Feature: gene Location: 639-860 bp Feature: gene Location: 921-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 -12 00 bp Feature: gene Location: 1263-2021 bp Feature: domain Description: IS285 Location: 1293-1983 bp Feature: domain Description: IS2 85 Location: 12 93-1983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15434 (GDP-mannose mannosyl hydrolase), RVT-GII, IS285 (COG3328)

Seq: NOSL01000029.1 Escherichia coli strain MOD1-EC6763 MOD1-EC6763_29_length_53655_cov_29.5734, whole genome shotgun sequence (53655 bp)
Overview 1 RT 1: 33831-38114 bp Neighborhood of RT #1 [33831, 38122] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 33831-34736 bp Feature: gene Location: 34994-35191 bp Feature: gene Location: 35222-35761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35552-35630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5552-3 563 0 bp Feature: gene Location: 35789-36310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35795-36077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5795-3 6077 bp Feature: domain Description: GIIM Note: maturase Location: 36125-36305 bp Feature: domain Description: GIIM Note: maturase Location: 3 6125-3 63 05 bp Feature: gene Location: 36632-36820 bp Feature: gene Location: 36860-38122 bp Feature: domain Description: YesM Location: 37373-38114 bp Feature: domain Description: YesM Location: 3 73 73 -3 8114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: NOSL01000062.1 Escherichia coli strain MOD1-EC6763 MOD1-EC6763_62_length_17678_cov_28.5626, whole genome shotgun sequence (17678 bp)
Overview 1 RT 1: 9837-13719 bp Neighborhood of RT #1 [9837, 13724] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9837-10295 bp Feature: domain Description: dut Location: 9843-10290 bp Feature: domain Description: dut Location: 984 3-10290 bp Feature: gene Location: 10402-10998 bp Feature: domain Description: slmA Location: 10408-10984 bp Feature: domain Description: slmA Location: 104 08-10984 bp Feature: gene Location: 11044-12003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11179-11728 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11179-11728 bp Feature: gene Location: 12301-12957 bp Feature: domain Description: pyrE Location: 12319-12952 bp Feature: domain Description: pyrE Location: 12319-12952 bp Feature: gene Location: 13008-13724 bp Feature: domain Description: rph Location: 13011-13719 bp Feature: domain Description: rph Location: 13011-13719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NOSL01000080.1 Escherichia coli strain MOD1-EC6763 MOD1-EC6763_80_length_8041_cov_28.16, whole genome shotgun sequence (8040 bp)
Overview 1 RT 1: 3015-6408 bp Neighborhood of RT #1 [3015, 6422] DUF977 RVT-Retrons HOK_GEF Feature: gene Location: 3015-3416 bp Feature: domain Description: DUF977 Location: 3018-3414 bp Feature: domain Description: DUF977 Location: 3018-3414 bp Feature: gene Location: 3469-3615 bp Feature: gene Location: 3870-5705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4005-4701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4005 -4701 bp Feature: gene Location: 5882-6061 bp Feature: gene Location: 6210-6422 bp Feature: domain Description: HOK_GEF Location: 6285-6408 bp Feature: domain Description: HOK_GEF Location: 6285 -6408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF977 (pfam06163), RVT-Retrons, HOK_GEF (pfam01848)