myRT

myRT report for GCA_002521665.1_ASM252166v1

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Seq: NORI01000002.1 Escherichia coli strain MOD1-EC6799 MOD1-EC6799_2_length_275881_cov_41.185, whole genome shotgun sequence (275880 bp)
Overview 1 RT 1: 141099-144981 bp Neighborhood of RT #1 [141099, 144986] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 141099-141557 bp Feature: domain Description: dut Location: 141105-141552 bp Feature: domain Description: dut Location: 1 41 1 05-1 41 552 bp Feature: gene Location: 141664-142260 bp Feature: domain Description: slmA Location: 141670-142246 bp Feature: domain Description: slmA Location: 1 41 670-1 42246 bp Feature: gene Location: 142306-143265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142441-142990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 42441 -1 42990 bp Feature: gene Location: 143563-144219 bp Feature: domain Description: pyrE Location: 143581-144214 bp Feature: domain Description: pyrE Location: 1 43581 -1 4421 4 bp Feature: gene Location: 144270-144986 bp Feature: domain Description: rph Location: 144273-144981 bp Feature: domain Description: rph Location: 1 44273-1 44981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NORI01000003.1 Escherichia coli strain MOD1-EC6799 MOD1-EC6799_3_length_260521_cov_38.5676, whole genome shotgun sequence (260520 bp)
Overview 1 RT 1: 3643-6403 bp Neighborhood of RT #1 [3643, 6408] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 3643-3780 bp Feature: gene Location: 3796-3930 bp Feature: gene Location: 4038-5408 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4266-4872 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 42 66-4872 bp Feature: gene Location: 5386-5937 bp Feature: domain Description: SLATT_5 Location: 5392-5908 bp Feature: domain Description: SLATT_5 Location: 5392 -5908 bp Feature: gene Location: 6160-6408 bp Feature: domain Description: PRK10597 Location: 6163-6403 bp Feature: domain Description: PRK10597 Location: 6163-6403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: NORI01000082.1 Escherichia coli strain MOD1-EC6799 MOD1-EC6799_82_length_2642_cov_22.4643, whole genome shotgun sequence (2640 bp)
Overview 1 RT 1: 187-2449 bp Neighborhood of RT #1 [187, 2514] RVT-GII GIIM PHA02517 Feature: gene Location: 187-1710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: gene Location: 2302-2514 bp Feature: domain Description: PHA02517 Location: 2305-2449 bp Feature: domain Description: PHA02517 Location: 23 05-2449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)