myRT

myRT report for GCA_002521675.1_ASM252167v1

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Seq: NORJ01000030.1 Escherichia coli strain MOD1-EC6798 MOD1-EC6798_30_length_53187_cov_44.4671, whole genome shotgun sequence (53187 bp)
Overview 1 RT 1: 45196-53099 bp Neighborhood of RT #1 [45196, 53099] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Feature: gene Location: 45196-47778 bp Feature: domain Description: mutS1 Location: 45247-47767 bp Feature: domain Description: mutS1 Location: 45247-47767 bp Feature: gene Location: 47923-49383 bp Feature: domain Description: INT_Rci_Hp1_C Location: 48298-48505 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 48298-48505 bp Feature: domain Description: INT_P4_C Location: 48724-49261 bp Feature: domain Description: INT_P4_C Location: 48724-49261 bp Feature: gene Location: 50639-52657 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51209-51659 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51 209-51 659 bp Feature: gene Location: 52896-53099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8

Seq: NORJ01000040.1 Escherichia coli strain MOD1-EC6798 MOD1-EC6798_40_length_39396_cov_47.8566, whole genome shotgun sequence (39396 bp)
Overview 1 RT 1: 1649-5856 bp Neighborhood of RT #1 [1649, 5856] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1649-1816 bp Feature: gene Location: 1936-2370 bp Feature: domain Description: PHA02517 Location: 1984-2305 bp Feature: domain Description: PHA02 517 Location: 1984-2 305 bp Feature: gene Location: 2962-4485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3235-3967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 35-3967 bp Feature: domain Description: GIIM Note: maturase Location: 4042-4240 bp Feature: domain Description: GIIM Note: maturase Location: 4042 -42 40 bp Feature: gene Location: 4614-5054 bp Feature: domain Description: PHA02517 Location: 4617-5019 bp Feature: domain Description: PHA02 517 Location: 4617-5019 bp Feature: gene Location: 5233-5856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)