myRT

myRT report for GCA_002521855.1_ASM252185v1

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Seq: NORY01000136.1 Escherichia coli strain MOD1-EC6778 MOD1-EC6778_136_length_2309_cov_28.0381, whole genome shotgun sequence (2309 bp)
Overview 1 RT 1: 197-2173 bp Neighborhood of RT #1 [197, 2173] RVT-GII GIIM Feature: gene Location: 197-346 bp Feature: gene Location: 419-1669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623-1 280 bp Feature: domain Description: GIIM Note: maturase Location: 1361-1583 bp Feature: domain Description: GIIM Note: maturase Location: 1 361 -1 583 bp Feature: gene Location: 1693-1980 bp Feature: gene Location: 2033-2173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NORY01000023.1 Escherichia coli strain MOD1-EC6778 MOD1-EC6778_23_length_69969_cov_23.8625, whole genome shotgun sequence (69969 bp)
Overview 1 RT 1: 30587-34878 bp Neighborhood of RT #1 [30587, 34878] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 30587-31849 bp Feature: domain Description: YesM Location: 31100-31841 bp Feature: domain Description: YesM Location: 31100-31841 bp Feature: gene Location: 31879-32049 bp Feature: gene Location: 32399-32920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32405-32687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 405-32 687 bp Feature: domain Description: GIIM Note: maturase Location: 32735-32915 bp Feature: domain Description: GIIM Note: maturase Location: 32 735-32 915 bp Feature: gene Location: 32948-33487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33278-33356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 78-33356 bp Feature: gene Location: 33518-33715 bp Feature: gene Location: 33973-34878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NORY01000039.1 Escherichia coli strain MOD1-EC6778 MOD1-EC6778_39_length_36368_cov_19.8965, whole genome shotgun sequence (36368 bp)
Overview 1 RT 1: 16009-19359 bp Neighborhood of RT #1 [16009, 19391] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 16009-16656 bp Feature: domain Description: PinE Location: 16102-16651 bp Feature: domain Description: PinE Location: 16102-16651 bp Feature: gene Location: 16756-17157 bp Feature: gene Location: 17366-18718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17687-18305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17687-183 05 bp Feature: domain Description: GIIM Note: maturase Location: 18353-18584 bp Feature: domain Description: GIIM Note: maturase Location: 183 53 -18584 bp Feature: gene Location: 18789-19139 bp Feature: gene Location: 19194-19391 bp Feature: domain Description: PRK09413 Location: 19197-19359 bp Feature: domain Description: PRK09413 Location: 19197-193 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: NORY01000063.1 Escherichia coli strain MOD1-EC6778 MOD1-EC6778_63_length_18276_cov_21.8083, whole genome shotgun sequence (18276 bp)
Overview 1 RT 1: 2-4900 bp Neighborhood of RT #1 [2, 4900] AAA_21 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 2-1912 bp Feature: domain Description: AAA_21 Location: 458-680 bp Feature: domain Description: AAA_21 Location: 4 58-680 bp Feature: gene Location: 2027-3127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2210-2738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2210-2738 bp Feature: gene Location: 3783-4652 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 4305-4476 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 4 305-4 4 76 bp Feature: gene Location: 4649-4900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)