myRT

myRT report for GCA_002521905.1_ASM252190v1

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Seq: NORZ01000036.1 Escherichia coli strain MOD1-EC6777 MOD1-EC6777_36_length_39761_cov_32.7518, whole genome shotgun sequence (39761 bp)
Overview 1 RT 1: 193-2218 bp Neighborhood of RT #1 [193, 2218] YhhI RVT-GII GIIM Feature: gene Location: 193-453 bp Feature: domain Description: YhhI Location: 268-439 bp Feature: domain Description: YhhI Location: 268-439 bp Feature: gene Location: 464-1714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 668-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 668-1 325 bp Feature: domain Description: GIIM Note: maturase Location: 1406-1628 bp Feature: domain Description: GIIM Note: maturase Location: 1 406-1 628 bp Feature: gene Location: 1738-2025 bp Feature: gene Location: 2078-2218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: NORZ01000046.1 Escherichia coli strain MOD1-EC6777 MOD1-EC6777_46_length_30315_cov_44.1764, whole genome shotgun sequence (30315 bp)
Overview 1 RT 1: 23517-26894 bp Neighborhood of RT #1 [23517, 26899] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 23517-23714 bp Feature: domain Description: PRK09413 Location: 23520-23682 bp Feature: domain Description: PRK09413 Location: 2 352 0-2 3682 bp Feature: gene Location: 23769-24119 bp Feature: gene Location: 24190-25542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24511-25129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4511-2 512 9 bp Feature: domain Description: GIIM Note: maturase Location: 25177-25408 bp Feature: domain Description: GIIM Note: maturase Location: 2 5177-2 5408 bp Feature: gene Location: 25751-26152 bp Feature: gene Location: 26252-26899 bp Feature: domain Description: PinE Location: 26345-26894 bp Feature: domain Description: PinE Location: 2 6345-2 6894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: NORZ01000069.1 Escherichia coli strain MOD1-EC6777 MOD1-EC6777_69_length_10525_cov_59.8873, whole genome shotgun sequence (10525 bp)
Overview 1 RT 1: 2-3680 bp Neighborhood of RT #1 [2, 3715] PHA02517 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 2-142 bp Feature: domain Description: PHA02517 Location: 8-77 bp Feature: domain Description: PHA02517 Location: 8-77 bp Feature: gene Location: 734-2257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-173 9 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: gene Location: 2538-2849 bp Feature: domain Description: InsE Location: 2541-2832 bp Feature: domain Description: InsE Location: 2541-283 2 bp Feature: gene Location: 2948-3715 bp Feature: domain Description: PHA02517 Location: 2972-3680 bp Feature: domain Description: PHA02517 Location: 2972-3 680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)