myRT

myRT report for GCA_002522125.1_ASM252212v1

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Seq: NOSP01000013.1 Escherichia coli strain MOD1-EC6759 MOD1-EC6759_13_length_120057_cov_35.981, whole genome shotgun sequence (120057 bp)
Overview 1 RT 1: 99199-102656 bp Neighborhood of RT #1 [99199, 102656] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 99199-99363 bp Feature: gene Location: 99397-100899 bp Feature: domain Description: PRK13889 Location: 99400-99979 bp Feature: domain Description: PRK1 3889 Location: 99400-99979 bp Feature: gene Location: 100976-102076 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101117-101669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 1 1 7-1 01 669 bp Feature: gene Location: 102069-102350 bp Feature: domain Description: HTH_XRE Location: 102084-102249 bp Feature: domain Description: HTH_XRE Location: 1 02084-1 02249 bp Feature: gene Location: 102441-102656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: NOSP01000067.1 Escherichia coli strain MOD1-EC6759 MOD1-EC6759_67_length_6908_cov_22.3253, whole genome shotgun sequence (6908 bp)
Overview 1 RT 1: 62-3655 bp Neighborhood of RT #1 [62, 3655] IS285 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 62-208 bp Feature: domain Description: IS285 Location: 71-200 bp Feature: domain Description: IS2 85 Location: 71-2 00 bp Feature: gene Location: 726-1007 bp Feature: gene Location: 1588-2781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738-2389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738-2 389 bp Feature: domain Description: GIIM Note: maturase Location: 2467-2692 bp Feature: domain Description: GIIM Note: maturase Location: 2 467-2 692 bp Feature: gene Location: 2882-3028 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2894-3005 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 894-3005 bp Feature: gene Location: 3452-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), IS285 (COG3328)

Seq: NOSP01000072.1 Escherichia coli strain MOD1-EC6759 MOD1-EC6759_72_length_6096_cov_31.8197, whole genome shotgun sequence (6096 bp)
Overview 1 RT 1: 693-3936 bp Neighborhood of RT #1 [693, 3936] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 693-2417 bp Feature: RT Description: RVT_N Location: 750-987 bp Feature: RT Description: RVT_N Location: 750-987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 8-1686 bp Feature: domain Description: YkfC Location: 1818-1974 bp Feature: domain Description: YkfC Location: 1818-1974 bp Feature: domain Description: HNHc Note: nucleases Location: 2202-2361 bp Feature: domain Description: HNHc Note: nucleases Location: 2202-23 61 bp Feature: gene Location: 2494-3396 bp Feature: domain Description: DUF1281 Location: 2563-3091 bp Feature: domain Description: DUF1281 Location: 2563 -3 091 bp Feature: domain Description: DUF1281_C Location: 3097-3337 bp Feature: domain Description: DUF1281_C Location: 3 097-3 3 3 7 bp Feature: gene Location: 3466-3936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)