myRT

myRT report for GCA_002522625.1_ASM252262v1

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Seq: NOUB01000015.1 Escherichia coli strain MOD1-EC6702 MOD1-EC6702_15_length_167672_cov_59.9324, whole genome shotgun sequence (167672 bp)
Overview 1 RT 1: 121522-127974 bp Neighborhood of RT #1 [121522, 127974] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 121522-121827 bp Feature: gene Location: 122710-124986 bp Feature: domain Description: AAA_15 Location: 122743-123751 bp Feature: domain Description: AAA_1 5 Location: 1 22743-1 23751 bp Feature: gene Location: 125101-126201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125281-125815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 25281 -1 2581 5 bp Feature: gene Location: 126857-127693 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 127346-127517 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 27346-1 2751 7 bp Feature: gene Location: 127723-127974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: NOUB01000019.1 Escherichia coli strain MOD1-EC6702 MOD1-EC6702_19_length_91231_cov_66.4381, whole genome shotgun sequence (91231 bp)
Overview 1 RT 1: 1-3245 bp Neighborhood of RT #1 [1, 3250] Caudo_TAP RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-183 bp Feature: gene Location: 183-767 bp Feature: domain Description: Caudo_TAP Location: 399-756 bp Feature: domain Description: Caudo_TAP Location: 399-756 bp Feature: gene Location: 880-2250 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1108-1714 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1108-1714 bp Feature: gene Location: 2228-2779 bp Feature: domain Description: SLATT_5 Location: 2234-2750 bp Feature: domain Description: SLATT_5 Location: 2 2 34-2 750 bp Feature: gene Location: 3002-3250 bp Feature: domain Description: PRK10597 Location: 3005-3245 bp Feature: domain Description: PRK10597 Location: 3005-32 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: NOUB01000001.1 Escherichia coli strain MOD1-EC6702 MOD1-EC6702_1_length_418188_cov_71.2775, whole genome shotgun sequence (418188 bp)
Overview 1 RT 1: 319928-325550 bp Neighborhood of RT #1 [319928, 325550] P Q RVT-Retrons Feature: gene Location: 319928-321694 bp Feature: domain Description: P Location: 319955-321689 bp Feature: domain Description: P Location: 3 19955-3 21689 bp Feature: gene Location: 321694-322719 bp Feature: domain Description: Q Location: 321700-322714 bp Feature: domain Description: Q Location: 3 21700-3 22714 bp Feature: gene Location: 322761-324701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 323085-323709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 23 085-3 23 709 bp Feature: gene Location: 324743-324886 bp Feature: gene Location: 324939-325550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons

Seq: NOUB01000009.1 Escherichia coli strain MOD1-EC6702 MOD1-EC6702_9_length_184094_cov_70.5452, whole genome shotgun sequence (184094 bp)
Overview 1 RT 1: 49289-53171 bp Neighborhood of RT #1 [49289, 53176] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49289-49747 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: domain Description: dut Location: 4 9295-4 974 2 bp Feature: gene Location: 49854-50450 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: domain Description: slmA Location: 4 9860-504 36 bp Feature: gene Location: 50496-51455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: gene Location: 51753-52409 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: domain Description: pyrE Location: 51771-524 04 bp Feature: gene Location: 52460-53176 bp Feature: domain Description: rph Location: 52463-53171 bp Feature: domain Description: rph Location: 524 63-53171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)