myRT

myRT report for GCA_002529945.1_ASM252994v1

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Seq: NXSK01000039.1 Listeria monocytogenes strain CFSAN046037 CFSAN046037_contig_0000039, whole genome shotgun sequence (42304 bp)
Overview 1 RT 1: 5615-15492 bp Neighborhood of RT #1 [5615, 15506] COG4932 CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB COG4932 PRK06482 RVT-GII LysR TpcC Feature: gene Location: 5615-11371 bp Feature: domain Description: COG4932 Location: 5654-9440 bp Feature: domain Description: COG4932 Location: 5654-9440 bp Feature: domain Description: CollagenBindB Location: 9494-9776 bp Feature: domain Description: CollagenBindB Location: 9494-9776 bp Feature: domain Description: CollagenBindB Location: 9791-10067 bp Feature: domain Description: CollagenBindB Location: 9791 -1 0067 bp Feature: domain Description: CollagenBindB Location: 10082-10337 bp Feature: domain Description: CollagenBindB Location: 1 0082-1 0337 bp Feature: domain Description: CollagenBindB Location: 10352-10625 bp Feature: domain Description: CollagenBindB Location: 1 0352-1 0625 bp Feature: domain Description: CollagenBindB Location: 10640-10895 bp Feature: domain Description: CollagenBindB Location: 1 0640-1 0895 bp Feature: domain Description: CollagenBindB Location: 10913-11162 bp Feature: domain Description: CollagenBindB Location: 1 091 3-1 1 1 62 bp Feature: domain Description: COG4932 Location: 11231-11366 bp Feature: domain Description: COG4932 Location: 1 1 231 -1 1 366 bp Feature: gene Location: 12044-12388 bp Feature: domain Description: PRK06482 Location: 12125-12377 bp Feature: domain Description: PRK06482 Location: 1 21 25-1 2377 bp Feature: gene Location: 12283-13002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12604-13000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2604-1 3000 bp Feature: gene Location: 13456-14361 bp Feature: domain Description: LysR Location: 13459-14338 bp Feature: domain Description: LysR Location: 1 3459-1 4338 bp Feature: gene Location: 14595-15506 bp Feature: domain Description: TpcC Location: 14826-15492 bp Feature: domain Description: TpcC Location: 1 4826-1 5492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06482 (SDR family oxidoreductase), RVT-GII, LysR (COG0583), TpcC (pfam12642), COG4932 (Uncharacterized surface anchored protein ), CollagenBindB (cl15753)