myRT

myRT report for GCA_002531805.1_ASM253180v1

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Seq: NWSW01000014.1 Rhizobium sp. M1 Scaffold12_1, whole genome shotgun sequence (185004 bp)
Overview 1 RT 1: 168070-173700 bp Neighborhood of RT #1 [168070, 173700] RVT-Retrons Trypsin_2 ftrA Feature: gene Location: 168070-169026 bp Feature: gene Location: 169161-169331 bp Feature: gene Location: 169798-171393 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169963-170548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 69963-1 70548 bp Feature: domain Description: Trypsin_2 Location: 170905-171313 bp Feature: domain Description: Trypsin_2 Location: 1 70905-1 71 31 3 bp Feature: gene Location: 172062-173111 bp Feature: domain Description: ftrA Location: 172152-173100 bp Feature: domain Description: ftrA Location: 1 721 52-1 731 00 bp Feature: gene Location: 173221-173700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), ftrA (PRK09393)

Seq: NWSW01000003.1 Rhizobium sp. M1 Scaffold3_1, whole genome shotgun sequence (376429 bp)
Overview 1 RT 1: 116882-122081 bp Neighborhood of RT #1 [116882, 122081] Methyltransf_17 RVT-G2L4 dCache_1 CHD Feature: gene Location: 116882-117370 bp Feature: domain Description: Methyltransf_17 Location: 116885-117356 bp Feature: domain Description: Methyltransf_17 Location: 116885-117356 bp Feature: gene Location: 117605-117874 bp Feature: gene Location: 117966-119480 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 118380-119019 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 118380-119019 bp Feature: gene Location: 119697-121610 bp Feature: domain Description: dCache_1 Location: 119934-120507 bp Feature: domain Description: dCache_1 Location: 119934-12 0507 bp Feature: domain Description: CHD Location: 121050-121590 bp Feature: domain Description: CHD Location: 12 1050-12 1590 bp Feature: gene Location: 121755-122081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_17 (pfam12692), RVT-G2L4, dCache_1 (pfam02743), CHD (cd07302)

Seq: NWSW01000050.1 Rhizobium sp. M1 Scaffold47_1, whole genome shotgun sequence (29746 bp)
Overview 1 RT 1: 4064-6305 bp Neighborhood of RT #1 [4064, 6305] SAM_DCase_Bsu Ald RVT-GII SnoaL_4 Feature: gene Location: 4064-4549 bp Feature: domain Description: SAM_DCase_Bsu Location: 4184-4502 bp Feature: domain Description: SAM_DCase_Bsu Location: 4184-4502 bp Feature: gene Location: 4581-4847 bp Feature: domain Description: Ald Location: 4596-4728 bp Feature: domain Description: Ald Location: 4596-4728 bp Feature: gene Location: 4953-5300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5001-5244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5001-5244 bp Feature: gene Location: 5401-5991 bp Feature: domain Description: SnoaL_4 Location: 5464-5836 bp Feature: domain Description: SnoaL_4 Location: 5464-583 6 bp Feature: gene Location: 6171-6305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SAM_DCase_Bsu (TIGR03330), Ald (COG0686), RVT-GII, SnoaL_4 (pfam13577)

Seq: NWSW01000069.1 Rhizobium sp. M1 Scaffold62_1, whole genome shotgun sequence (16140 bp)
Overview 1 RT 1: 1-3217 bp Neighborhood of RT #1 [1, 3231] RVT-GII gabD Feature: gene Location: 1-408 bp Feature: gene Location: 534-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1197 bp Feature: gene Location: 1274-1459 bp Feature: gene Location: 1744-3231 bp Feature: domain Description: gabD Location: 1774-3217 bp Feature: domain Description: gabD Location: 1774 -3217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, gabD (PRK11241)

Seq: NWSW01000076.1 Rhizobium sp. M1 Scaffold69_1, whole genome shotgun sequence (8022 bp)
Overview 1 RT 1: 176-4534 bp Neighborhood of RT #1 [176, 4534] RVT-UG13 YrpB Feature: gene Location: 176-544 bp Feature: gene Location: 649-2478 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1072-1543 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1072-15 43 bp Feature: gene Location: 2873-3832 bp Feature: domain Description: YrpB Location: 2876-3824 bp Feature: domain Description: YrpB Location: 2876-3824 bp Feature: gene Location: 4127-4534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13, YrpB (COG2070)