myRT

myRT report for GCA_002531965.1_ASM253196v1

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Seq: NWTC01000012.1 Sinorhizobium fredii strain PCH1 Scaffold12_1, whole genome shotgun sequence (178622 bp)
Overview 1 RT 1: 101053-107235 bp Neighborhood of RT #1 [101053, 107235] SIR2_2 YjgR DUF87 YjgR RVT-UG12 HTH_Tnp_1 Feature: gene Location: 101053-102357 bp Feature: domain Description: SIR2_2 Location: 101599-102130 bp Feature: domain Description: SIR2_2 Location: 1 01 599-1 021 30 bp Feature: gene Location: 102354-104438 bp Feature: domain Description: YjgR Location: 102756-103083 bp Feature: domain Description: YjgR Location: 1 02756-1 03083 bp Feature: domain Description: DUF87 Location: 103773-103896 bp Feature: domain Description: DUF87 Location: 1 03773-1 03896 bp Feature: domain Description: YjgR Location: 103959-104433 bp Feature: domain Description: YjgR Location: 1 03959-1 04433 bp Feature: gene Location: 104581-106272 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 104986-105415 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 04986-1 0541 5 bp Feature: gene Location: 106382-106816 bp Feature: domain Description: HTH_Tnp_1 Location: 106460-106613 bp Feature: domain Description: HTH_Tnp_1 Location: 1 06460-1 0661 3 bp Feature: gene Location: 107020-107235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), DUF87 (pfam01935), RVT-UG12, HTH_Tnp_1 (pfam01527)

Seq: NWTC01000033.1 Sinorhizobium fredii strain PCH1 Scaffold33_1, whole genome shotgun sequence (58068 bp)
Overview 1 RT 1: 16750-18762 bp Neighborhood of RT #1 [16750, 18875] TraH_2 RVT-GII group_II_RT_mat Feature: gene Location: 16750-17352 bp Feature: domain Description: TraH_2 Location: 16753-17347 bp Feature: domain Description: TraH_2 Location: 16753-17347 bp Feature: gene Location: 17528-17677 bp Feature: gene Location: 17849-18211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18107-18173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18107-18173 bp Feature: gene Location: 18244-18402 bp Feature: gene Location: 18411-18875 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 18414-18762 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 18414-18762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraH_2 (pfam06871), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: NWTC01000048.1 Sinorhizobium fredii strain PCH1 Scaffold47_1, whole genome shotgun sequence (21182 bp)
Overview 1 RT 1: 213-2254 bp Neighborhood of RT #1 [213, 2319] RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Feature: gene Location: 213-455 bp Feature: gene Location: 599-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1151 bp Feature: gene Location: 1295-2077 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1877-2072 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1877-2072 bp Feature: gene Location: 2146-2319 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2155-2254 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2155-2254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817)

Seq: NWTC01000054.1 Sinorhizobium fredii strain PCH1 Scaffold53_1, whole genome shotgun sequence (15819 bp)
Overview 1 RT 1: 123-3238 bp Neighborhood of RT #1 [123, 3285] RVT-GII COG3547 Feature: gene Location: 123-299 bp Feature: gene Location: 637-1803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 5-14 35 bp Feature: gene Location: 1833-2270 bp Feature: gene Location: 2647-3285 bp Feature: domain Description: COG3547 Location: 2674-3238 bp Feature: domain Description: COG354 7 Location: 2674 -3238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: NWTC01000097.1 Sinorhizobium fredii strain PCH1 Scaffold96_1, whole genome shotgun sequence (2178 bp)
Overview 1 RT 1: 1-2175 bp Neighborhood of RT #1 [1, 2175] RVT-GII Feature: gene Location: 1-153 bp Feature: gene Location: 162-1412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-105 0 bp Feature: gene Location: 1660-2175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII