myRT

myRT report for GCA_002532025.1_ASM253202v1

Download annotations/find similar RTs

Seq: NWTF01000117.1 Bradyrhizobium ottawaense strain L2 Scaffold108_1, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 113-1792 bp Neighborhood of RT #1 [113, 1792] RVT-GII GIIM Feature: gene Location: 113-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485-1 1 42 bp Feature: domain Description: GIIM Note: maturase Location: 1217-1421 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 7-1 421 bp Feature: gene Location: 1562-1792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NWTF01000021.1 Bradyrhizobium ottawaense strain L2 Scaffold20_1, whole genome shotgun sequence (146178 bp)
Overview 1 RT 1: 168-6721 bp Neighborhood of RT #1 [168, 6759] RVT-GII Intron_maturas2 Resolvase Recombinase Zn_ribbon_recom RHH_1 RVT-GII ArdC Feature: gene Location: 168-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-612 bp Feature: domain Description: Intron_maturas2 Location: 723-1005 bp Feature: domain Description: Intron_maturas2 Location: 72 3-1005 bp Feature: gene Location: 1300-3042 bp Feature: domain Description: Resolvase Location: 1312-1753 bp Feature: domain Description: Resolvase Location: 1312 -1753 bp Feature: domain Description: Recombinase Location: 1840-2200 bp Feature: domain Description: Recombinase Location: 1840-2 2 00 bp Feature: domain Description: Zn_ribbon_recom Location: 2242-2428 bp Feature: domain Description: Zn_ribbon_recom Location: 2 2 42 -2 42 8 bp Feature: gene Location: 3183-3512 bp Feature: domain Description: RHH_1 Location: 3384-3492 bp Feature: domain Description: RHH_1 Location: 3384-3492 bp Feature: gene Location: 3738-4265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4005-4146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4005-4146 bp Feature: gene Location: 4626-4826 bp Feature: gene Location: 5809-6759 bp Feature: domain Description: ArdC Location: 5839-6721 bp Feature: domain Description: ArdC Location: 5839-672 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RHH_1 (pfam01402), ArdC (COG4227)

Seq: NWTF01000043.1 Bradyrhizobium ottawaense strain L2 Scaffold38_1, whole genome shotgun sequence (36562 bp)
Overview 1 RT 1: 25912-28597 bp Neighborhood of RT #1 [25912, 28597] RVT-GII RVT-GII GIIM DUF772 Feature: gene Location: 25912-26100 bp Feature: gene Location: 26227-26367 bp Feature: gene Location: 26373-27128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26631-27000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2663 1-27000 bp Feature: gene Location: 27037-27648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27049-27259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27049-27259 bp Feature: domain Description: GIIM Note: maturase Location: 27340-27568 bp Feature: domain Description: GIIM Note: maturase Location: 273 40-27568 bp Feature: gene Location: 27659-27916 bp Feature: domain Description: DUF772 Location: 27722-27830 bp Feature: domain Description: DUF772 Location: 27722-2783 0 bp Feature: gene Location: 27953-28597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NWTF01000046.1 Bradyrhizobium ottawaense strain L2 Scaffold41_1, whole genome shotgun sequence (34258 bp)
Overview 1 RT 1: 7662-14330 bp Neighborhood of RT #1 [7662, 14611] Autoind_bind LuxR_C_like MhpC RVT-UG16 YjgR YjgR SIR2_2 Feature: gene Location: 7662-8369 bp Feature: domain Description: Autoind_bind Location: 7722-8088 bp Feature: domain Description: Autoind_bind Location: 7722-8088 bp Feature: domain Description: LuxR_C_like Location: 8181-8349 bp Feature: domain Description: LuxR_C_like Location: 8181-834 9 bp Feature: gene Location: 8397-9242 bp Feature: domain Description: MhpC Location: 8451-9234 bp Feature: domain Description: MhpC Location: 84 51-9234 bp Feature: gene Location: 9927-11471 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 10353-10755 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 10353-10755 bp Feature: gene Location: 11628-13328 bp Feature: domain Description: YjgR Location: 11964-12246 bp Feature: domain Description: YjgR Location: 11964 -1224 6 bp Feature: domain Description: YjgR Location: 12897-13242 bp Feature: domain Description: YjgR Location: 12897-1324 2 bp Feature: gene Location: 13325-14611 bp Feature: domain Description: SIR2_2 Location: 13892-14330 bp Feature: domain Description: SIR2_2 Location: 13892-14 330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Autoind_bind (pfam03472), LuxR_C_like (cd06170), MhpC (COG0596), RVT-UG16, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: NWTF01000053.1 Bradyrhizobium ottawaense strain L2 Scaffold47_2, whole genome shotgun sequence (2836 bp)
Overview 1 RT 1: 2-2768 bp Neighborhood of RT #1 [2, 2833] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-442 bp Feature: domain Description: PHA02517 Location: 32-326 bp Feature: domain Description: PHA025 17 Location: 32-326 bp Feature: gene Location: 604-813 bp Feature: gene Location: 982-2511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255-1990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125 5 -1990 bp Feature: domain Description: GIIM Note: maturase Location: 2062-2290 bp Feature: domain Description: GIIM Note: maturase Location: 2062-2290 bp Feature: gene Location: 2624-2833 bp Feature: domain Description: PHA02517 Location: 2627-2768 bp Feature: domain Description: PHA025 17 Location: 2627-2768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NWTF01000057.1 Bradyrhizobium ottawaense strain L2 Scaffold51_1, whole genome shotgun sequence (1602 bp)
Overview 1 RT 1: 2-1167 bp Neighborhood of RT #1 [2, 1167] RVT-GII Feature: gene Location: 2-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-482 bp Feature: gene Location: 497-826 bp Feature: gene Location: 1012-1167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII