myRT

myRT report for GCA_002532535.1_ASM253253v1

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Seq: NQWI01000248.1 Candidatus Viridilinea mediisalina strain Kir15-3F NODE_1681_length_2171_cov_141.252, whole genome shotgun sequence (2171 bp)
Overview 1 RT 1: 121-2051 bp Neighborhood of RT #1 [121, 2051] RVT_N RVT-GII GIIM Feature: gene Location: 121-1596 bp Feature: domain Description: RVT_N Location: 178-421 bp Feature: domain Description: RVT_N Location: 1 78-421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1 1 23 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1393 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 77-1 393 bp Feature: gene Location: 1645-1821 bp Feature: gene Location: 1923-2051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NQWI01000076.1 Candidatus Viridilinea mediisalina strain Kir15-3F NODE_266_length_23166_cov_153.121, whole genome shotgun sequence (23166 bp)
Overview 1 RT 1: 3381-9442 bp Neighborhood of RT #1 [3381, 9471] RVT-DGRs COG5635 pfam03781 COG5323 Feature: gene Location: 3381-3764 bp Feature: gene Location: 3909-4343 bp Feature: gene Location: 4537-5583 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4744-5398 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4744-5398 bp Feature: gene Location: 5746-8445 bp Feature: domain Description: COG5635 Location: 6037-7237 bp Feature: domain Description: COG5635 Location: 6037-72 37 bp Feature: domain Description: pfam03781 Location: 7588-8428 bp Feature: domain Description: pfam03781 Location: 7588-842 8 bp Feature: gene Location: 8272-9471 bp Feature: domain Description: COG5323 Location: 8905-9442 bp Feature: domain Description: COG532 3 Location: 8905-9442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), COG5323 (Large terminase phage packaging protein )

Seq: NQWI01000015.1 Candidatus Viridilinea mediisalina strain Kir15-3F NODE_71_length_70874_cov_162.862, whole genome shotgun sequence (70874 bp)
Overview 1 RT 1: 1913-6270 bp Neighborhood of RT #1 [1913, 6272] YafY Cas2_I_II_III RVT-CRISPR cas1 Csx15_I-U Feature: gene Location: 1913-4243 bp Feature: domain Description: YafY Location: 3830-4130 bp Feature: domain Description: YafY Location: 3 83 0-413 0 bp Feature: gene Location: 4309-4584 bp Feature: domain Description: Cas2_I_II_III Location: 4321-4546 bp Feature: domain Description: Cas2_I_II_III Location: 43 21-4546 bp Feature: gene Location: 4655-5353 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4904-5039 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4904-503 9 bp Feature: domain Description: cas1 Location: 5051-5345 bp Feature: domain Description: cas1 Location: 5051-53 45 bp Feature: gene Location: 5364-5549 bp Feature: gene Location: 5853-6272 bp Feature: domain Description: Csx15_I-U Location: 5979-6270 bp Feature: domain Description: Csx15_I-U Location: 5979-6270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafY (COG2378), Cas2_I_II_III (cl11442), RVT-CRISPR, cas1 (TIGR00287), Csx15_I-U (cd09766)

Seq: NQWI01000022.1 Candidatus Viridilinea mediisalina strain Kir15-3F NODE_87_length_59958_cov_161.413, whole genome shotgun sequence (59958 bp)
Overview 1 RT 1: 2404-8334 bp Neighborhood of RT #1 [2404, 8345] COG1848 Avd_like RVT-DGRs COG5635 COG5635 YfmG YcjD Feature: gene Location: 2404-2841 bp Feature: domain Description: COG1848 Location: 2407-2770 bp Feature: domain Description: COG184 8 Location: 24 07-2770 bp Feature: gene Location: 3238-3594 bp Feature: domain Description: Avd_like Location: 3268-3571 bp Feature: domain Description: Avd_like Location: 3268-3571 bp Feature: gene Location: 3591-4667 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3801-4452 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3801-4 4 52 bp Feature: gene Location: 4785-7706 bp Feature: domain Description: COG5635 Location: 5283-5367 bp Feature: domain Description: COG5635 Location: 5283-5367 bp Feature: domain Description: COG5635 Location: 5622-6507 bp Feature: domain Description: COG5635 Location: 5622-6507 bp Feature: domain Description: YfmG Location: 6933-7689 bp Feature: domain Description: YfmG Location: 6933-7689 bp Feature: gene Location: 8013-8345 bp Feature: domain Description: YcjD Location: 8019-8334 bp Feature: domain Description: YcjD Location: 8019-8334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1848 (Predicted nucleic acid-binding protein, contains PIN domain ), Avd_like (cd16376), RVT-DGRs, COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), YcjD (COG2852)