myRT

myRT report for GCA_002534695.1_ASM253469v1

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Seq: NKUN01000051.1 Escherichia coli strain MOD1-EC5932 MOD1-EC5932_51_length_27970_cov_36.7248, whole genome shotgun sequence (27970 bp)
Overview 1 RT 1: 841-5201 bp Neighborhood of RT #1 [841, 5203] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 841-1941 bp Feature: domain Description: D Location: 847-1930 bp Feature: domain Description: D Location: 847-1 930 bp Feature: gene Location: 2032-2250 bp Feature: domain Description: PRK09678 Location: 2035-2233 bp Feature: domain Description: PRK09678 Location: 2035-2233 bp Feature: gene Location: 2654-3427 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2789-3242 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2789-3242 bp Feature: gene Location: 4113-4595 bp Feature: domain Description: SmpB Location: 4143-4590 bp Feature: domain Description: SmpB Location: 41 43-4590 bp Feature: gene Location: 4727-5203 bp Feature: domain Description: PRK10724 Location: 4733-5201 bp Feature: domain Description: PRK1 0724 Location: 4733-5201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NKUN01000079.1 Escherichia coli strain MOD1-EC5932 MOD1-EC5932_79_length_7113_cov_28.118, whole genome shotgun sequence (7113 bp)
Overview 1 RT 1: 2198-4826 bp Neighborhood of RT #1 [2198, 4826] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2198-2398 bp Feature: gene Location: 2512-2646 bp Feature: gene Location: 2671-4371 bp Feature: domain Description: RVT_N Location: 2725-2968 bp Feature: domain Description: RVT_N Location: 2 72 5-2 968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013-3649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013-3649 bp Feature: domain Description: GIIM Note: maturase Location: 3700-3934 bp Feature: domain Description: GIIM Note: maturase Location: 3700-3934 bp Feature: domain Description: HNHc Note: nucleases Location: 4165-4315 bp Feature: domain Description: HNHc Note: nucleases Location: 4165-4315 bp Feature: gene Location: 4496-4660 bp Feature: gene Location: 4671-4826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NKUN01000007.1 Escherichia coli strain MOD1-EC5932 MOD1-EC5932_7_length_154948_cov_35.8514, whole genome shotgun sequence (154948 bp)
Overview 1 RT 1: 48697-52579 bp Neighborhood of RT #1 [48697, 52584] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 48697-49155 bp Feature: domain Description: dut Location: 48703-49150 bp Feature: domain Description: dut Location: 48703 -49150 bp Feature: gene Location: 49262-49858 bp Feature: domain Description: slmA Location: 49268-49844 bp Feature: domain Description: slmA Location: 49268-49844 bp Feature: gene Location: 49904-50863 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50039-50588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5003 9-50588 bp Feature: gene Location: 51161-51817 bp Feature: domain Description: pyrE Location: 51179-51812 bp Feature: domain Description: pyrE Location: 51179-51812 bp Feature: gene Location: 51868-52584 bp Feature: domain Description: rph Location: 51871-52579 bp Feature: domain Description: rph Location: 51871-52579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)