myRT

myRT report for GCA_002535125.1_ASM253512v1

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Seq: NMAX01000011.1 Escherichia coli strain MOD1-EC6224 MOD1-EC6224_11_length_115815_cov_21.0846, whole genome shotgun sequence (115815 bp)
Overview 1 RT 1: 102413-106295 bp Neighborhood of RT #1 [102413, 106300] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 102413-103129 bp Feature: domain Description: rph Location: 102416-103124 bp Feature: domain Description: rph Location: 1 0241 6-1 031 24 bp Feature: gene Location: 103180-103836 bp Feature: domain Description: pyrE Location: 103198-103831 bp Feature: domain Description: pyrE Location: 1 031 98-1 03831 bp Feature: gene Location: 104134-105093 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104269-104818 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 04269-1 0481 8 bp Feature: gene Location: 105139-105735 bp Feature: domain Description: slmA Location: 105145-105721 bp Feature: domain Description: slmA Location: 1 051 45-1 05721 bp Feature: gene Location: 105842-106300 bp Feature: domain Description: dut Location: 105848-106295 bp Feature: domain Description: dut Location: 1 05848-1 06295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NMAX01000034.1 Escherichia coli strain MOD1-EC6224 MOD1-EC6224_34_length_48802_cov_21.4092, whole genome shotgun sequence (48802 bp)
Overview 1 RT 1: 21440-25800 bp Neighborhood of RT #1 [21440, 25802] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 21440-22540 bp Feature: domain Description: D Location: 21446-22529 bp Feature: domain Description: D Location: 2 1446-2 2 52 9 bp Feature: gene Location: 22631-22849 bp Feature: domain Description: PRK09678 Location: 22634-22832 bp Feature: domain Description: PRK09678 Location: 2 2 634-2 2 832 bp Feature: gene Location: 23253-24026 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 23388-23841 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 3388-2 3841 bp Feature: gene Location: 24712-25194 bp Feature: domain Description: SmpB Location: 24742-25189 bp Feature: domain Description: SmpB Location: 2 4742 -2 5189 bp Feature: gene Location: 25326-25802 bp Feature: domain Description: PRK10724 Location: 25332-25800 bp Feature: domain Description: PRK1072 4 Location: 2 5332 -2 5800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NMAX01000046.1 Escherichia coli strain MOD1-EC6224 MOD1-EC6224_46_length_34535_cov_35.6968, whole genome shotgun sequence (34535 bp)
Overview 1 RT 1: 10746-13310 bp Neighborhood of RT #1 [10746, 13330] TnpB_IS66 RVT_N RVT-GII InsA InsE Feature: gene Location: 10746-11057 bp Feature: domain Description: TnpB_IS66 Location: 10773-11052 bp Feature: domain Description: TnpB_IS66 Location: 10773 -11052 bp Feature: gene Location: 11264-11404 bp Feature: gene Location: 11655-12578 bp Feature: domain Description: RVT_N Location: 11703-11946 bp Feature: domain Description: RVT_N Location: 11703 -11946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11991-12561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11991-12561 bp Feature: gene Location: 12607-12879 bp Feature: domain Description: InsA Location: 12610-12826 bp Feature: domain Description: InsA Location: 12610-12826 bp Feature: gene Location: 12911-13330 bp Feature: domain Description: InsE Location: 12926-13310 bp Feature: domain Description: InsE Location: 12926-13 3 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, InsA (COG3677), InsE (COG2963)

Seq: NMAX01000077.1 Escherichia coli strain MOD1-EC6224 MOD1-EC6224_77_length_13830_cov_14.3908, whole genome shotgun sequence (13830 bp)
Overview 1 RT 1: 8289-11426 bp Neighborhood of RT #1 [8289, 11426] DUF1281 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 8289-8648 bp Feature: domain Description: DUF1281 Location: 8298-8613 bp Feature: domain Description: DUF1281 Location: 8298-8613 bp Feature: gene Location: 8712-9023 bp Feature: gene Location: 9253-10953 bp Feature: domain Description: RVT_N Location: 9307-9550 bp Feature: domain Description: RVT_N Location: 9307-9550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9595-10231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9595-10231 bp Feature: domain Description: GIIM Note: maturase Location: 10282-10516 bp Feature: domain Description: GIIM Note: maturase Location: 10282-10516 bp Feature: domain Description: HNHc Note: nucleases Location: 10747-10897 bp Feature: domain Description: HNHc Note: nucleases Location: 1074 7-10897 bp Feature: gene Location: 10990-11118 bp Feature: gene Location: 11169-11426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NMAX01000086.1 Escherichia coli strain MOD1-EC6224 MOD1-EC6224_86_length_11203_cov_41.9214, whole genome shotgun sequence (11203 bp)
Overview 1 RT 1: 8811-10796 bp Neighborhood of RT #1 [8811, 11041] PHA02517 RVT-GII GIIM Feature: gene Location: 8811-9074 bp Feature: gene Location: 9132-9578 bp Feature: domain Description: PHA02517 Location: 9135-9576 bp Feature: domain Description: PHA025 17 Location: 9135 -95 76 bp Feature: gene Location: 9695-11041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9791-10523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9791-105 23 bp Feature: domain Description: GIIM Note: maturase Location: 10598-10796 bp Feature: domain Description: GIIM Note: maturase Location: 105 98-10796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)