myRT

myRT report for GCA_002535765.1_ASM253576v1

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Seq: NMBF01000013.1 Escherichia coli strain MOD1-EC6197 MOD1-EC6197_13_length_158477_cov_22.2575, whole genome shotgun sequence (158477 bp)
Overview 1 RT 1: 57054-63147 bp Neighborhood of RT #1 [57054, 63158] proA PRK09692 RVT-UG7 COG3378 Feature: gene Location: 57054-58307 bp Feature: domain Description: proA Location: 57081-58272 bp Feature: domain Description: proA Location: 57081 -58272 bp Feature: gene Location: 58662-59846 bp Feature: domain Description: PRK09692 Location: 58668-59823 bp Feature: domain Description: PRK09692 Location: 58668-59823 bp Feature: gene Location: 59839-61467 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60247-60676 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60247-60676 bp Feature: gene Location: 61464-62204 bp Feature: gene Location: 62403-63158 bp Feature: domain Description: COG3378 Location: 62409-63147 bp Feature: domain Description: COG3378 Location: 62409-631 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, COG3378 (Phage- or plasmid-associated DNA primase )

Seq: NMBF01000040.1 Escherichia coli strain MOD1-EC6197 MOD1-EC6197_40_length_12719_cov_22.7439, whole genome shotgun sequence (12719 bp)
Overview 1 RT 1: 1573-4384 bp Neighborhood of RT #1 [1573, 4395] YkfC RVT-GII PHA02517 Feature: gene Location: 1573-1725 bp Feature: gene Location: 1806-2822 bp Feature: domain Description: YkfC Location: 2502-2772 bp Feature: domain Description: YkfC Location: 2 502 -2 772 bp Feature: gene Location: 2683-3495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-3355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 776-3355 bp Feature: gene Location: 3668-3853 bp Feature: gene Location: 3976-4395 bp Feature: domain Description: PHA02517 Location: 3979-4384 bp Feature: domain Description: PHA02 517 Location: 3979-4384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: NMBF01000048.1 Escherichia coli strain MOD1-EC6197 MOD1-EC6197_48_length_7898_cov_38.5302, whole genome shotgun sequence (7898 bp)
Overview 1 RT 1: 2072-7286 bp Neighborhood of RT #1 [2072, 7286] COG4584 PRK09183 RVT_N RVT-GII RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 2072-3094 bp Feature: domain Description: COG4584 Location: 2075-2945 bp Feature: domain Description: COG4584 Location: 2075-2945 bp Feature: gene Location: 3094-3873 bp Feature: domain Description: PRK09183 Location: 3100-3871 bp Feature: domain Description: PRK09183 Location: 3 100-3 871 bp Feature: gene Location: 4405-5139 bp Feature: domain Description: RVT_N Location: 4462-4699 bp Feature: domain Description: RVT_N Location: 4462-4699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4750-5116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4750-5116 bp Feature: gene Location: 5207-6130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5219-5399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5219-53 99 bp Feature: domain Description: GIIM Note: maturase Location: 5453-5684 bp Feature: domain Description: GIIM Note: maturase Location: 5453 -5684 bp Feature: domain Description: HNHc Note: nucleases Location: 5915-6074 bp Feature: domain Description: HNHc Note: nucleases Location: 5915-6074 bp Feature: gene Location: 6207-7109 bp Feature: domain Description: DUF1281 Location: 6276-6804 bp Feature: domain Description: DUF1281 Location: 6276-6804 bp Feature: domain Description: DUF1281_C Location: 6810-7050 bp Feature: domain Description: DUF1281_C Location: 6810-7050 bp Feature: gene Location: 7113-7286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)