myRT

myRT report for GCA_002536095.1_ASM253609v1

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Seq: NMCD01000025.1 Escherichia coli strain MOD1-EC6139 MOD1-EC6139_25_length_54612_cov_26.1621, whole genome shotgun sequence (54612 bp)
Overview 1 RT 1: 9832-13714 bp Neighborhood of RT #1 [9832, 13719] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9832-10290 bp Feature: domain Description: dut Location: 9838-10285 bp Feature: domain Description: dut Location: 9838-1 0285 bp Feature: gene Location: 10397-10993 bp Feature: domain Description: slmA Location: 10403-10979 bp Feature: domain Description: slmA Location: 1 0403-1 0979 bp Feature: gene Location: 11039-11998 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11174-11723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 74-1 1 723 bp Feature: gene Location: 12296-12952 bp Feature: domain Description: pyrE Location: 12314-12947 bp Feature: domain Description: pyrE Location: 1 231 4-1 2947 bp Feature: gene Location: 13003-13719 bp Feature: domain Description: rph Location: 13006-13714 bp Feature: domain Description: rph Location: 1 3006-1 371 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NMCD01000043.1 Escherichia coli strain MOD1-EC6139 MOD1-EC6139_43_length_26741_cov_28.6535, whole genome shotgun sequence (26741 bp)
Overview 1 RT 1: 25348-26609 bp Neighborhood of RT #1 [25348, 26740] RVT-GII GIIM RVT-GII Feature: gene Location: 25348-25518 bp Feature: gene Location: 25656-25835 bp Feature: gene Location: 25934-26455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25940-26222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5940-2 62 2 2 bp Feature: domain Description: GIIM Note: maturase Location: 26270-26450 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 70-2 6450 bp Feature: gene Location: 26483-26740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531-26609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6531-2 6609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NMCD01000058.1 Escherichia coli strain MOD1-EC6139 MOD1-EC6139_58_length_13675_cov_32.0058, whole genome shotgun sequence (13675 bp)
Overview 1 RT 1: 11808-13636 bp Neighborhood of RT #1 [11808, 13674] Asparaginase_2 RVT-GII Feature: gene Location: 11808-12839 bp Feature: domain Description: Asparaginase_2 Location: 11898-12831 bp Feature: domain Description: Asparaginase_2 Location: 11898-1283 1 bp Feature: gene Location: 13166-13315 bp Feature: gene Location: 13363-13674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13534-13636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 53 4-13 63 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII