myRT

myRT report for GCA_002536225.1_ASM253622v1

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Seq: NMCU01000012.1 Escherichia coli strain MOD1-EC6118 MOD1-EC6118_12_length_126756_cov_43.9129, whole genome shotgun sequence (126756 bp)
Overview 1 RT 1: 2646-9469 bp Neighborhood of RT #1 [2646, 9606] CbtA_toxin RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 2646-3011 bp Feature: domain Description: CbtA_toxin Location: 2649-2979 bp Feature: domain Description: CbtA_toxin Location: 2649-2979 bp Feature: gene Location: 3575-4045 bp Feature: gene Location: 4392-7601 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4920-5409 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4920-5409 bp Feature: domain Description: nitrilase Location: 6915-7512 bp Feature: domain Description: nitrilase Location: 691 5-751 2 bp Feature: gene Location: 7896-8699 bp Feature: domain Description: AbiEi_3_N Location: 7929-8190 bp Feature: domain Description: AbiEi_3_N Location: 7929-81 90 bp Feature: domain Description: AbiEi_3 Location: 8202-8658 bp Feature: domain Description: AbiEi_3 Location: 8202-8658 bp Feature: gene Location: 8686-9606 bp Feature: domain Description: AbiEii Location: 8728-9469 bp Feature: domain Description: AbiEii Location: 8728-9469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbtA_toxin (pfam06755), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NMCU01000059.1 Escherichia coli strain MOD1-EC6118 MOD1-EC6118_59_length_26145_cov_38.9344, whole genome shotgun sequence (26145 bp)
Overview 1 RT 1: 15090-20080 bp Neighborhood of RT #1 [15090, 20082] DDE_Tnp_ISL3 DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 15090-15467 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15093-15426 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15093-1542 6 bp Feature: gene Location: 15719-16645 bp Feature: domain Description: DUF1281 Location: 15812-16340 bp Feature: domain Description: DUF12 81 Location: 15812 -16340 bp Feature: domain Description: DUF1281_C Location: 16346-16586 bp Feature: domain Description: DUF12 81_C Location: 16346-16586 bp Feature: gene Location: 17149-18849 bp Feature: domain Description: RVT_N Location: 17203-17446 bp Feature: domain Description: RVT_N Location: 172 03-17446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17491-18127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17491-1812 7 bp Feature: domain Description: GIIM Note: maturase Location: 18178-18412 bp Feature: domain Description: GIIM Note: maturase Location: 18178-18412 bp Feature: domain Description: HNHc Note: nucleases Location: 18643-18793 bp Feature: domain Description: HNHc Note: nucleases Location: 18643-18793 bp Feature: gene Location: 18886-19014 bp Feature: gene Location: 19216-20082 bp Feature: domain Description: PRK13699 Location: 19471-20080 bp Feature: domain Description: PRK13699 Location: 19471-2 0080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)