myRT

myRT report for GCA_002536435.1_ASM253643v1

Download annotations/find similar RTs

Seq: NMCV01000137.1 Escherichia coli strain MOD1-EC6110 MOD1-EC6110_137_length_837_cov_5.14342, whole genome shotgun sequence (837 bp)
Overview 1 RT 1: 3-423 bp Neighborhood of RT #1 [3, 836] RVT-UG1 Feature: gene Location: 3-836 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 12-423 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 2-423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1

Seq: NMCV01000027.1 Escherichia coli strain MOD1-EC6110 MOD1-EC6110_27_length_66065_cov_21.5363, whole genome shotgun sequence (66065 bp)
Overview 1 RT 1: 4093-9458 bp Neighborhood of RT #1 [4093, 9493] RVT-UG7 PRK09692 proA Feature: gene Location: 4093-4233 bp Feature: gene Location: 4343-5083 bp Feature: gene Location: 5080-6708 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5488-5917 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5488-5917 bp Feature: gene Location: 6701-7885 bp Feature: domain Description: PRK09692 Location: 6707-7862 bp Feature: domain Description: PRK09692 Location: 6707-7862 bp Feature: gene Location: 8240-9493 bp Feature: domain Description: proA Location: 8267-9458 bp Feature: domain Description: proA Location: 82 67-9458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: NMCV01000064.1 Escherichia coli strain MOD1-EC6110 MOD1-EC6110_64_length_21122_cov_22.8611, whole genome shotgun sequence (21120 bp)
Overview 1 RT 1: 1881-5881 bp Neighborhood of RT #1 [1881, 5889] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 1881-3242 bp Feature: domain Description: DcuC Location: 1884-3216 bp Feature: domain Description: DcuC Location: 1884-3 216 bp Feature: gene Location: 3295-3666 bp Feature: gene Location: 3888-4334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4194-4296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4194-4296 bp Feature: gene Location: 4382-4531 bp Feature: gene Location: 4858-5889 bp Feature: domain Description: Asparaginase_2 Location: 4948-5881 bp Feature: domain Description: Asparaginase_2 Location: 4948-5881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: NMCV01000073.1 Escherichia coli strain MOD1-EC6110 MOD1-EC6110_73_length_16636_cov_23.8023, whole genome shotgun sequence (16636 bp)
Overview 1 RT 1: 3-1606 bp Neighborhood of RT #1 [3, 1680] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 3-338 bp Feature: domain Description: InsE Location: 6-297 bp Feature: domain Description: InsE Location: 6-297 bp Feature: gene Location: 377-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 22-578 bp Feature: gene Location: 614-850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617-797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617-797 bp Feature: gene Location: 843-1055 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 846-1044 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 84 6-104 4 bp Feature: gene Location: 1198-1680 bp Feature: domain Description: IS285 Location: 1228-1606 bp Feature: domain Description: IS285 Location: 1228-1606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)