myRT

myRT report for GCA_002536805.1_ASM253680v1

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Seq: NMBC01000023.1 Escherichia coli strain MOD1-EC6209 MOD1-EC6209_23_length_90303_cov_19.0851, whole genome shotgun sequence (90303 bp)
Overview 1 RT 1: 87271-90299 bp Neighborhood of RT #1 [87271, 90301] HTH_29 HTH_33 DDE_3 RVT-AbiP2 PRK09183 Feature: gene Location: 87271-87561 bp Feature: gene Location: 87571-88632 bp Feature: domain Description: HTH_29 Location: 87691-87862 bp Feature: domain Description: HTH_29 Location: 87691 -87862 bp Feature: domain Description: HTH_33 Location: 87895-88057 bp Feature: domain Description: HTH_33 Location: 87895-88057 bp Feature: domain Description: DDE_3 Location: 88099-88528 bp Feature: domain Description: DDE_3 Location: 88099-88528 bp Feature: gene Location: 88734-90104 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 88995-89451 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 88995-89451 bp Feature: gene Location: 90143-90301 bp Feature: domain Description: PRK09183 Location: 90146-90299 bp Feature: domain Description: PRK091 83 Location: 901 46-90299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional)

Seq: NMBC01000048.1 Escherichia coli strain MOD1-EC6209 MOD1-EC6209_48_length_21150_cov_22.2308, whole genome shotgun sequence (21150 bp)
Overview 1 RT 1: 2-3194 bp Neighborhood of RT #1 [2, 3256] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_Tn3 Feature: gene Location: 2-322 bp Feature: domain Description: PHA02517 Location: 5-257 bp Feature: domain Description: PHA02 517 Location: 5-2 57 bp Feature: gene Location: 914-2437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187-1919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187-1919 bp Feature: domain Description: GIIM Note: maturase Location: 1994-2192 bp Feature: domain Description: GIIM Note: maturase Location: 1994-2 192 bp Feature: gene Location: 2555-3001 bp Feature: domain Description: PHA02517 Location: 2558-2996 bp Feature: domain Description: PHA02 517 Location: 2 558-2 996 bp Feature: gene Location: 3083-3256 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3086-3194 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3086-3194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)