myRT

myRT report for GCA_002537185.1_ASM253718v1

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Seq: NMCC01000023.1 Escherichia coli strain MOD1-EC6140 MOD1-EC6140_23_length_54618_cov_30.7646, whole genome shotgun sequence (54618 bp)
Overview 1 RT 1: 9838-13720 bp Neighborhood of RT #1 [9838, 13725] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9838-10296 bp Feature: domain Description: dut Location: 9844-10291 bp Feature: domain Description: dut Location: 9844-1 0291 bp Feature: gene Location: 10403-10999 bp Feature: domain Description: slmA Location: 10409-10985 bp Feature: domain Description: slmA Location: 1 0409-1 0985 bp Feature: gene Location: 11045-12004 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11180-11729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 80-1 1 729 bp Feature: gene Location: 12302-12958 bp Feature: domain Description: pyrE Location: 12320-12953 bp Feature: domain Description: pyrE Location: 1 2320-1 2953 bp Feature: gene Location: 13009-13725 bp Feature: domain Description: rph Location: 13012-13720 bp Feature: domain Description: rph Location: 1 301 2-1 3720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NMCC01000041.1 Escherichia coli strain MOD1-EC6140 MOD1-EC6140_41_length_31016_cov_10.9552, whole genome shotgun sequence (31016 bp)
Overview 1 RT 1: 29149-30977 bp Neighborhood of RT #1 [29149, 31015] Asparaginase_2 RVT-GII Feature: gene Location: 29149-30180 bp Feature: domain Description: Asparaginase_2 Location: 29239-30172 bp Feature: domain Description: Asparaginase_2 Location: 2 92 39-30172 bp Feature: gene Location: 30507-30656 bp Feature: gene Location: 30704-31015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30875-30977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30875-30977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII

Seq: NMCC01000045.1 Escherichia coli strain MOD1-EC6140 MOD1-EC6140_45_length_26741_cov_33.6746, whole genome shotgun sequence (26741 bp)
Overview 1 RT 1: 25348-26609 bp Neighborhood of RT #1 [25348, 26740] RVT-GII GIIM RVT-GII Feature: gene Location: 25348-25518 bp Feature: gene Location: 25656-25835 bp Feature: gene Location: 25934-26455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25940-26222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25940-26222 bp Feature: domain Description: GIIM Note: maturase Location: 26270-26450 bp Feature: domain Description: GIIM Note: maturase Location: 26270-26450 bp Feature: gene Location: 26483-26740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531-26609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2653 1-26609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)