myRT

myRT report for GCA_002537845.1_ASM253784v1

Download annotations/find similar RTs

Seq: NMKC01000016.1 Escherichia coli strain MOD1-EC6044 MOD1-EC6044_16_length_101886_cov_36.1521, whole genome shotgun sequence (101886 bp)
Overview 1 RT 1: 50-2883 bp Neighborhood of RT #1 [50, 2883] RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 50-1420 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 311-767 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31 1 -767 bp Feature: gene Location: 1522-2559 bp Feature: domain Description: HTH_29 Location: 1618-1789 bp Feature: domain Description: HTH_29 Location: 1 61 8-1 789 bp Feature: domain Description: HTH_33 Location: 1822-1984 bp Feature: domain Description: HTH_33 Location: 1 822-1 984 bp Feature: domain Description: DDE_3 Location: 2026-2455 bp Feature: domain Description: DDE_3 Location: 2026-2455 bp Feature: gene Location: 2593-2883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: NMKC01000020.1 Escherichia coli strain MOD1-EC6044 MOD1-EC6044_20_length_59645_cov_20.3055, whole genome shotgun sequence (59645 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 -94 bp Feature: gene Location: 291-602 bp Feature: domain Description: PRK10173 Location: 294-513 bp Feature: domain Description: PRK10173 Location: 2 94-513 bp Feature: gene Location: 586-1035 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK10173 Location: 589-102 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: NMKC01000041.1 Escherichia coli strain MOD1-EC6044 MOD1-EC6044_41_length_3615_cov_24.7453, whole genome shotgun sequence (3615 bp)
Overview 1 RT 1: 1438-3367 bp Neighborhood of RT #1 [1438, 3612] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1438-1842 bp Feature: domain Description: InsE Location: 1468-1804 bp Feature: domain Description: InsE Location: 1468-1804 bp Feature: gene Location: 1871-2227 bp Feature: domain Description: PHA02517 Location: 1874-2183 bp Feature: domain Description: PHA02517 Location: 1874-2183 bp Feature: gene Location: 2344-3612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2362-3094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 62-3 094 bp Feature: domain Description: GIIM Note: maturase Location: 3169-3367 bp Feature: domain Description: GIIM Note: maturase Location: 3 169-3 3 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NMKC01000048.1 Escherichia coli strain MOD1-EC6044 MOD1-EC6044_48_length_1329_cov_45.3259, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 3-1263 bp Neighborhood of RT #1 [3, 1328] RVT-GII PHA02517 Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 921-1328 bp Feature: domain Description: PHA02517 Location: 924-1263 bp Feature: domain Description: PHA02517 Location: 924 -1263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)