myRT

myRT report for GCA_002537995.1_ASM253799v1

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Seq: NMEI01000025.1 Escherichia coli strain MOD1-EC6032 MOD1-EC6032_25_length_76367_cov_33.2599, whole genome shotgun sequence (76367 bp)
Overview 1 RT 1: 73362-75487 bp Neighborhood of RT #1 [73362, 75726] RVT-Retrons Feature: gene Location: 73362-73556 bp Feature: gene Location: 73839-74807 bp Feature: gene Location: 74794-75726 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74896-75487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74896-75487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NMEI01000039.1 Escherichia coli strain MOD1-EC6032 MOD1-EC6032_39_length_28122_cov_18.1576, whole genome shotgun sequence (28122 bp)
Overview 1 RT 1: 25203-28096 bp Neighborhood of RT #1 [25203, 28119] PapG_CBD PapG_C RVT-GII GIIM COG4584 Feature: gene Location: 25203-26114 bp Feature: domain Description: PapG_CBD Location: 25266-25755 bp Feature: domain Description: PapG_CBD Location: 2 52 66-2 5755 bp Feature: domain Description: PapG_C Location: 25791-26109 bp Feature: domain Description: PapG_C Location: 2 5791-2 6109 bp Feature: gene Location: 26261-26566 bp Feature: gene Location: 26609-27904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26939-27557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6939-2 7557 bp Feature: domain Description: GIIM Note: maturase Location: 27605-27836 bp Feature: domain Description: GIIM Note: maturase Location: 2 7605-2 7836 bp Feature: gene Location: 27901-28119 bp Feature: domain Description: COG4584 Location: 27904-28096 bp Feature: domain Description: COG4584 Location: 2 7904-2 8096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PapG_CBD (cl28665), PapG_C (pfam03628), RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: NMEI01000047.1 Escherichia coli strain MOD1-EC6032 MOD1-EC6032_47_length_14141_cov_22.2506, whole genome shotgun sequence (14141 bp)
Overview 1 RT 1: 10984-14141 bp Neighborhood of RT #1 [10984, 14140] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 10984-11139 bp Feature: gene Location: 11170-11355 bp Feature: gene Location: 11744-13444 bp Feature: RT Description: RVT_N Location: 11798-12041 bp Feature: RT Description: RVT_N Location: 11798-12041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12086-12722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12086-12722 bp Feature: domain Description: GIIM Note: maturase Location: 12773-13007 bp Feature: domain Description: GIIM Note: maturase Location: 12773 -13 007 bp Feature: domain Description: HNHc Note: nucleases Location: 13238-13388 bp Feature: domain Description: HNHc Note: nucleases Location: 13 23 8-13 3 88 bp Feature: gene Location: 13931-14140 bp Feature: domain Description: PRK13699 Location: 14066-14141 bp Feature: domain Description: PRK13 699 Location: 14066-14141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: NMEI01000005.1 Escherichia coli strain MOD1-EC6032 MOD1-EC6032_5_length_258182_cov_33.9381, whole genome shotgun sequence (258180 bp)
Overview 1 RT 1: 186630-193193 bp Neighborhood of RT #1 [186630, 193201] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 186630-186905 bp Feature: domain Description: DUF5405 Location: 186648-186888 bp Feature: domain Description: DUF54 05 Location: 18664 8-186888 bp Feature: gene Location: 186895-189165 bp Feature: domain Description: Phage_GPA Location: 187294-188281 bp Feature: domain Description: Phage_GPA Location: 187294 -188281 bp Feature: gene Location: 189493-190482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189610-190171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189610-190171 bp Feature: gene Location: 190484-191836 bp Feature: domain Description: ABC_ATPase Location: 190544-191267 bp Feature: domain Description: ABC_ATPase Location: 19054 4 -191267 bp Feature: gene Location: 192167-193201 bp Feature: domain Description: Q Location: 192170-193193 bp Feature: domain Description: Q Location: 192170-193193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)