myRT

myRT report for GCA_002538415.1_ASM253841v1

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Seq: NMFM01000018.1 Escherichia coli strain MOD1-EC5998 MOD1-EC5998_18_length_92602_cov_35.6385, whole genome shotgun sequence (92602 bp)
Overview 1 RT 1: 19066-22597 bp Neighborhood of RT #1 [19066, 22704] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 19066-19407 bp Feature: domain Description: Arm-DNA-bind_3 Location: 19075-19330 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 9075-1 9330 bp Feature: gene Location: 19544-19858 bp Feature: gene Location: 19884-20816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19986-20580 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9986-20580 bp Feature: gene Location: 20818-21804 bp Feature: gene Location: 22432-22704 bp Feature: domain Description: PRK09678 Location: 22441-22597 bp Feature: domain Description: PRK09678 Location: 22441 -22597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: NMFM01000037.1 Escherichia coli strain MOD1-EC5998 MOD1-EC5998_37_length_15565_cov_8.08465, whole genome shotgun sequence (15565 bp)
Overview 1 RT 1: 11802-14973 bp Neighborhood of RT #1 [11802, 14975] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 11802-12485 bp Feature: domain Description: PRK10276 Location: 12105-12468 bp Feature: domain Description: PRK102 76 Location: 12 105-12 468 bp Feature: gene Location: 12539-13141 bp Feature: gene Location: 13116-14126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13122-13734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1312 2 -13734 bp Feature: gene Location: 14249-14461 bp Feature: gene Location: 14472-14975 bp Feature: domain Description: DDE_Tnp_IS1 Location: 14583-14973 bp Feature: domain Description: DDE_Tnp_IS1 Location: 14583-14973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: NMFM01000004.1 Escherichia coli strain MOD1-EC5998 MOD1-EC5998_4_length_283598_cov_35.4342, whole genome shotgun sequence (283598 bp)
Overview 1 RT 1: 178146-184933 bp Neighborhood of RT #1 [178146, 185823] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 178146-179165 bp Feature: domain Description: Q Location: 178149-179160 bp Feature: domain Description: Q Location: 178149-179160 bp Feature: gene Location: 179208-179915 bp Feature: gene Location: 179912-181102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180062-180644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180062-180644 bp Feature: gene Location: 181653-183197 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 182070-182523 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 182070-182523 bp Feature: gene Location: 183363-183623 bp Feature: gene Location: 183685-185823 bp Feature: domain Description: Phage_GPA Location: 183946-184933 bp Feature: domain Description: Phage_GPA Location: 183 946-18493 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)