myRT

myRT report for GCA_002538735.1_ASM253873v1

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Seq: NMGL01000001.1 Escherichia coli strain MOD1-EC5969 MOD1-EC5969_1_length_486200_cov_31.3684, whole genome shotgun sequence (486200 bp)
Overview 1 RT 1: 112120-115871 bp Neighborhood of RT #1 [112120, 116080] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 112120-112353 bp Feature: domain Description: DinI Location: 112162-112348 bp Feature: domain Description: DinI Location: 1 1 21 62-1 1 2348 bp Feature: gene Location: 112522-112656 bp Feature: gene Location: 112831-113766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112933-113527 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 2933-1 1 3527 bp Feature: gene Location: 113766-115400 bp Feature: domain Description: COG3950 Location: 113904-115362 bp Feature: domain Description: COG3950 Location: 1 1 3904-1 1 5362 bp Feature: gene Location: 115520-116080 bp Feature: domain Description: TIGR02646 Location: 115523-115871 bp Feature: domain Description: TIGR02646 Location: 1 1 5523-1 1 5871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NMGL01000026.1 Escherichia coli strain MOD1-EC5969 MOD1-EC5969_26_length_65135_cov_25.8245, whole genome shotgun sequence (65135 bp)
Overview 1 RT 1: 50450-54668 bp Neighborhood of RT #1 [50450, 54668] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 50450-50683 bp Feature: domain Description: DUF905 Location: 50480-50678 bp Feature: domain Description: DUF905 Location: 50480-50678 bp Feature: gene Location: 50741-51238 bp Feature: domain Description: PRK13732 Location: 50744-51236 bp Feature: domain Description: PRK13732 Location: 50744-512 36 bp Feature: gene Location: 51388-53289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51655-52486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51655-52 486 bp Feature: domain Description: Intron_maturas2 Location: 52600-52858 bp Feature: domain Description: Intron_maturas2 Location: 52 600-52 858 bp Feature: domain Description: HNHc Note: nucleases Location: 53032-53194 bp Feature: domain Description: HNHc Note: nucleases Location: 53032 -53194 bp Feature: gene Location: 53967-54173 bp Feature: gene Location: 54243-54668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)