myRT

myRT report for GCA_002538765.1_ASM253876v1

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Seq: NMGD01000021.1 Escherichia coli strain MOD1-EC5979 MOD1-EC5979_21_length_75963_cov_36.6608, whole genome shotgun sequence (75963 bp)
Overview 1 RT 1: 2-5226 bp Neighborhood of RT #1 [2, 5228] Psu RVT-UG15 PRK09692 PRK11462 Feature: gene Location: 2-175 bp Feature: domain Description: Psu Location: 11-158 bp Feature: domain Description: Psu Location: 1 1 -1 58 bp Feature: gene Location: 228-404 bp Feature: gene Location: 499-2109 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 907-1330 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 907-1 330 bp Feature: gene Location: 2127-3296 bp Feature: domain Description: PRK09692 Location: 2136-3279 bp Feature: domain Description: PRK09692 Location: 21 36-3279 bp Feature: gene Location: 3789-5228 bp Feature: domain Description: PRK11462 Location: 3849-5226 bp Feature: domain Description: PRK1 1 462 Location: 3849-5226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG15, PRK09692 (Integrase; provisional), PRK11462 (putative transporter; Provisional)

Seq: NMGD01000081.1 Escherichia coli strain MOD1-EC5979 MOD1-EC5979_81_length_14232_cov_26.7732, whole genome shotgun sequence (14232 bp)
Overview 1 RT 1: 2382-9695 bp Neighborhood of RT #1 [2382, 9733] ESPR Peptidase_S6 autotrans_barl RVT-GII GIIM PRK15185 Feature: gene Location: 2382-6365 bp Feature: domain Description: ESPR Location: 2427-2493 bp Feature: domain Description: ESPR Location: 2 42 7-2 493 bp Feature: domain Description: Peptidase_S6 Location: 2589-3939 bp Feature: domain Description: Peptidase_S6 Location: 2 589-3939 bp Feature: domain Description: autotrans_barl Location: 5139-6363 bp Feature: domain Description: autotrans_barl Location: 5139-6363 bp Feature: gene Location: 6678-6818 bp Feature: gene Location: 6848-8074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7049-7703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7049-7703 bp Feature: domain Description: GIIM Note: maturase Location: 7781-8003 bp Feature: domain Description: GIIM Note: maturase Location: 7781-8003 bp Feature: gene Location: 8910-9038 bp Feature: gene Location: 9215-9733 bp Feature: domain Description: PRK15185 Location: 9320-9695 bp Feature: domain Description: PRK15185 Location: 932 0-9695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388), PRK15185 (transcriptional regulator HilD; Provisional)

Seq: NMGD01000095.1 Escherichia coli strain MOD1-EC5979 MOD1-EC5979_95_length_6555_cov_24.2989, whole genome shotgun sequence (6555 bp)
Overview 1 RT 1: 247-3103 bp Neighborhood of RT #1 [247, 3114] RVT-GII GIIM T3SS_NleG YjiK Feature: gene Location: 247-825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 -3 97 bp Feature: domain Description: GIIM Note: maturase Location: 475-694 bp Feature: domain Description: GIIM Note: maturase Location: 475-694 bp Feature: gene Location: 1202-1822 bp Feature: domain Description: T3SS_NleG Location: 1514-1817 bp Feature: domain Description: T3 SS_NleG Location: 1514-1817 bp Feature: gene Location: 2473-3114 bp Feature: domain Description: YjiK Location: 2554-3103 bp Feature: domain Description: YjiK Location: 2554-3 103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), T3SS_NleG (pfam06416), YjiK (COG3204)