myRT

myRT report for GCA_002539255.1_ASM253925v1

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Seq: NLFN01000028.1 Escherichia coli strain MOD1-EC5953 MOD1-EC5953_28_length_33714_cov_35.8687, whole genome shotgun sequence (33714 bp)
Overview 1 RT 1: 6591-10339 bp Neighborhood of RT #1 [6591, 10344] D PRK09678 RVT-UG11 SmpB Feature: gene Location: 6591-7691 bp Feature: domain Description: D Location: 6597-7680 bp Feature: domain Description: D Location: 6597-7680 bp Feature: gene Location: 7782-8000 bp Feature: domain Description: PRK09678 Location: 7785-7983 bp Feature: domain Description: PRK09678 Location: 7785-7983 bp Feature: gene Location: 8404-9177 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 8539-8992 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 8539-8992 bp Feature: gene Location: 9562-9804 bp Feature: gene Location: 9862-10344 bp Feature: domain Description: SmpB Location: 9892-10339 bp Feature: domain Description: SmpB Location: 9892-1 0339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)

Seq: NLFN01000037.1 Escherichia coli strain MOD1-EC5953 MOD1-EC5953_37_length_21518_cov_38.1446, whole genome shotgun sequence (21518 bp)
Overview 1 RT 1: 1167-5282 bp Neighborhood of RT #1 [1167, 5282] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 1167-1319 bp Feature: domain Description: rve_2 Location: 1197-1305 bp Feature: domain Description: rve_2 Location: 1197-1305 bp Feature: gene Location: 1592-1897 bp Feature: gene Location: 1940-3328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-2888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 70-2 888 bp Feature: domain Description: GIIM Note: maturase Location: 2936-3167 bp Feature: domain Description: GIIM Note: maturase Location: 2 936-3167 bp Feature: gene Location: 3715-5106 bp Feature: domain Description: InsG Location: 3718-4639 bp Feature: domain Description: InsG Location: 3718-4639 bp Feature: domain Description: Transposase_20 Location: 4762-5008 bp Feature: domain Description: Transposase_2 0 Location: 4762 -5008 bp Feature: gene Location: 5115-5282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: NLFN01000042.1 Escherichia coli strain MOD1-EC5953 MOD1-EC5953_42_length_7899_cov_45.8371, whole genome shotgun sequence (7899 bp)
Overview 1 RT 1: 107-7872 bp Neighborhood of RT #1 [107, 7898] DDE_Tnp_IS66_C GIIM RVT-GII DDE_Tnp_IS66 COG3436 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix FHA_bHelix Feature: gene Location: 107-253 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 119-230 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 119-23 0 bp Feature: gene Location: 370-741 bp Feature: domain Description: GIIM Note: maturase Location: 442-664 bp Feature: domain Description: GIIM Note: maturase Location: 442-664 bp Feature: gene Location: 890-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091-1592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091-1592 bp Feature: gene Location: 2052-2441 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2157-2400 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2157-2400 bp Feature: gene Location: 2417-3493 bp Feature: domain Description: COG3436 Location: 2729-3200 bp Feature: domain Description: COG3 43 6 Location: 2729-3 200 bp Feature: gene Location: 3860-4510 bp Feature: domain Description: HTH_23 Location: 3911-4010 bp Feature: domain Description: HTH_23 Location: 3 911-4010 bp Feature: domain Description: InsE Location: 4136-4487 bp Feature: domain Description: InsE Location: 413 6-4487 bp Feature: gene Location: 4882-5085 bp Feature: gene Location: 5492-5866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5498-5669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5498-5669 bp Feature: gene Location: 5882-6694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155-6611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155-6611 bp Feature: gene Location: 7305-7898 bp Feature: domain Description: FHA_bHelix Location: 7320-7554 bp Feature: domain Description: FHA_bHelix Location: 73 20-7554 bp Feature: domain Description: FHA_bHelix Location: 7761-7872 bp Feature: domain Description: FHA_bHelix Location: 7761-7872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), RVT-GII, DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase ), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046)