myRT

myRT report for GCA_002539495.1_ASM253949v1

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Seq: NMHA01000015.1 Escherichia coli strain MOD1-EC5947 MOD1-EC5947_15_length_112998_cov_25.2595, whole genome shotgun sequence (112998 bp)
Overview 1 RT 1: 107585-111012 bp Neighborhood of RT #1 [107585, 111012] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 107585-107722 bp Feature: gene Location: 107755-109260 bp Feature: domain Description: PRK13889 Location: 107758-108358 bp Feature: domain Description: PRK1 3889 Location: 1 07758-1 08358 bp Feature: gene Location: 109332-110213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109338-109806 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 09338-1 09806 bp Feature: gene Location: 110425-110706 bp Feature: domain Description: HTH_XRE Location: 110440-110605 bp Feature: domain Description: HTH_XRE Location: 1 1 0440-1 1 0605 bp Feature: gene Location: 110797-111012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NMHA01000040.1 Escherichia coli strain MOD1-EC5947 MOD1-EC5947_40_length_9071_cov_69.1709, whole genome shotgun sequence (9071 bp)
Overview 1 RT 1: 55-3337 bp Neighborhood of RT #1 [55, 3339] ParB_N_like DUF905 RVT-GII GIIM RVT-GII PRK13732 Feature: gene Location: 55-453 bp Feature: domain Description: ParB_N_like Location: 223-442 bp Feature: domain Description: ParB_N_like Location: 2 2 3-442 bp Feature: gene Location: 518-751 bp Feature: domain Description: DUF905 Location: 548-746 bp Feature: domain Description: DUF905 Location: 548-746 bp Feature: gene Location: 916-1659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-12 58 bp Feature: domain Description: GIIM Note: maturase Location: 1330-1552 bp Feature: domain Description: GIIM Note: maturase Location: 1330-1552 bp Feature: gene Location: 1670-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2 2 13 bp Feature: gene Location: 2653-2796 bp Feature: gene Location: 2818-3339 bp Feature: domain Description: PRK13732 Location: 2821-3337 bp Feature: domain Description: PRK13732 Location: 2 82 1-3337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF905 (pfam06006), ParB_N_like (cd16411), GIIM (pfam08388), PRK13732 (single-stranded DNA-binding protein; Provisional)