myRT

myRT report for GCA_002539585.1_ASM253958v1

Download annotations/find similar RTs

Seq: NMHD01000018.1 Escherichia coli strain MOD1-EC5944 MOD1-EC5944_18_length_82043_cov_35.1138, whole genome shotgun sequence (82043 bp)
Overview 1 RT 1: 78770-81895 bp Neighborhood of RT #1 [78770, 81895] Pox_D5 RVT-Retrons TIR_2 Feature: gene Location: 78770-78946 bp Feature: gene Location: 79339-79491 bp Feature: domain Description: Pox_D5 Location: 79342-79465 bp Feature: domain Description: Pox_D5 Location: 79342-79465 bp Feature: gene Location: 79729-81360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80044-80641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80044-80641 bp Feature: domain Description: TIR_2 Location: 80965-81322 bp Feature: domain Description: TIR_2 Location: 80965-81 322 bp Feature: gene Location: 81722-81895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676)

Seq: NMHD01000099.1 Escherichia coli strain MOD1-EC5944 MOD1-EC5944_99_length_6094_cov_33.7746, whole genome shotgun sequence (6094 bp)
Overview 1 RT 1: 1-6086 bp Neighborhood of RT #1 [1, 6091] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 1-1164 bp Feature: domain Description: Phage_GPA Location: 7-274 bp Feature: domain Description: Phage_GPA Location: 7-2 74 bp Feature: gene Location: 1268-1486 bp Feature: gene Location: 1652-3196 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2069-2522 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 069-2 52 2 bp Feature: gene Location: 3539-3679 bp Feature: gene Location: 3753-4937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3897-4479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3897-4479 bp Feature: gene Location: 4934-5641 bp Feature: gene Location: 5684-6091 bp Feature: domain Description: Q Location: 5687-6086 bp Feature: domain Description: Q Location: 5687-6086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)