myRT

myRT report for GCA_002540145.1_ASM254014v1

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Seq: NMHK01000005.1 Escherichia coli strain MOD1-EC5937 MOD1-EC5937_5_length_197613_cov_35.574, whole genome shotgun sequence (197613 bp)
Overview 1 RT 1: 110446-116289 bp Neighborhood of RT #1 [110446, 116291] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 110446-110622 bp Feature: gene Location: 111015-111167 bp Feature: domain Description: Pox_D5 Location: 111018-111141 bp Feature: domain Description: Pox_D5 Location: 1 1 1 01 8-1 1 1 1 41 bp Feature: gene Location: 111405-113036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111720-112317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 720-1 1 231 7 bp Feature: domain Description: TIR_2 Location: 112641-112998 bp Feature: domain Description: TIR_2 Location: 1 1 2641 -1 1 2998 bp Feature: gene Location: 113623-115956 bp Feature: domain Description: Prim_Zn_Ribbon Location: 113713-113821 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1 1 371 3-1 1 3821 bp Feature: domain Description: COG3378 Location: 114430-115945 bp Feature: domain Description: COG3378 Location: 1 1 4430-1 1 5945 bp Feature: gene Location: 115971-116291 bp Feature: domain Description: DUF5375 Location: 115974-116289 bp Feature: domain Description: DUF5375 Location: 1 1 5974-1 1 6289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)

Seq: NMHK01000080.1 Escherichia coli strain MOD1-EC5937 MOD1-EC5937_80_length_3439_cov_49.5931, whole genome shotgun sequence (3439 bp)
Overview 1 RT 1: 494-2782 bp Neighborhood of RT #1 [494, 2841] PHA02517 InsE RVT-GII trans_reg_C Feature: gene Location: 494-901 bp Feature: domain Description: PHA02517 Location: 566-899 bp Feature: domain Description: PHA02 517 Location: 566-899 bp Feature: gene Location: 1037-1246 bp Feature: domain Description: InsE Location: 1049-1223 bp Feature: domain Description: InsE Location: 1049-12 2 3 bp Feature: gene Location: 1273-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1564-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1564-1654 bp Feature: gene Location: 1900-2241 bp Feature: gene Location: 2539-2841 bp Feature: domain Description: trans_reg_C Location: 2587-2782 bp Feature: domain Description: trans_reg_C Location: 2 587-2 782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383), PHA02517 (putative transposase OrfB; Reviewed)