myRT

myRT report for GCA_002541415.1_ASM254141v1

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Seq: NMDL01000015.1 Escherichia coli strain MOD1-EC6070 MOD1-EC6070_15_length_143702_cov_30.9201, whole genome shotgun sequence (143700 bp)
Overview 1 RT 1: 131155-135494 bp Neighborhood of RT #1 [131155, 135685] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C rve Feature: gene Location: 131155-131502 bp Feature: domain Description: TnpB_IS66 Location: 131182-131473 bp Feature: domain Description: TnpB_IS66 Location: 1 31 1 82-1 31 473 bp Feature: gene Location: 131522-132961 bp Feature: domain Description: LZ_Tnp_IS66 Location: 131660-131885 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 31 660-1 31 885 bp Feature: domain Description: zf-IS66 Location: 131906-132038 bp Feature: domain Description: zf-IS66 Location: 1 31 906-1 32038 bp Feature: domain Description: DDE_Tnp_IS66 Location: 132083-132920 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 32083-1 32920 bp Feature: gene Location: 133423-134655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133624-134278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33624-1 34278 bp Feature: domain Description: GIIM Note: maturase Location: 134356-134578 bp Feature: domain Description: GIIM Note: maturase Location: 1 34356-1 34578 bp Feature: gene Location: 134771-134917 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 134783-134894 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 34783-1 34894 bp Feature: gene Location: 134993-135685 bp Feature: domain Description: rve Location: 135128-135494 bp Feature: domain Description: rve Location: 1 351 28-1 35494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), rve (pfam00665)

Seq: NMDL01000023.1 Escherichia coli strain MOD1-EC6070 MOD1-EC6070_23_length_61195_cov_25.6429, whole genome shotgun sequence (61195 bp)
Overview 1 RT 1: 11232-14984 bp Neighborhood of RT #1 [11232, 15193] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 11232-11465 bp Feature: domain Description: DinI Location: 11274-11460 bp Feature: domain Description: DinI Location: 112 74-11460 bp Feature: gene Location: 11640-11768 bp Feature: gene Location: 11944-12879 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12046-12640 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 046-12 640 bp Feature: gene Location: 12879-14513 bp Feature: domain Description: COG3950 Location: 13017-14475 bp Feature: domain Description: COG3950 Location: 13017-14475 bp Feature: gene Location: 14633-15193 bp Feature: domain Description: TIGR02646 Location: 14636-14984 bp Feature: domain Description: TIGR02 646 Location: 14636-14984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)